| Entry | SW_score | bits | identity | overlap |
| syp:SYNPCC7002_G0090 | 151 | 40.2 | 0.275 | 255 |
| syp:SYNPCC7002_A0927 | 125 | 34.3 | 0.313 | 131 |
| syp:SYNPCC7002_A1076 | 123 | 33.8 | 0.327 | 104 |
| syp:SYNPCC7002_A0431 | 108 | 30.4 | 0.311 | 164 |
| syp:SYNPCC7002_A1540 | 107 | 30.2 | 0.388 | 49 |
| syp:SYNPCC7002_A1650 | 106 | 30.0 | 0.333 | 96 |
| syp:SYNPCC7002_A0760 | 103 | 29.3 | 0.367 | 49 |