| Entry | SW_score | bits | identity | overlap |
| smx:SM11_chr3410 | 528 | 126.2 | 0.338 | 296 |
| smx:SM11_pC0358 | 500 | 119.8 | 0.328 | 290 |
| smx:SM11_chr2656 | 484 | 116.1 | 0.286 | 297 |
| smx:SM11_pD0459 | 450 | 108.4 | 0.337 | 300 |
| smx:SM11_pC0843 | 450 | 108.4 | 0.311 | 293 |
| smx:SM11_chr0472 | 437 | 105.4 | 0.288 | 295 |
| smx:SM11_chr1702 | 433 | 104.5 | 0.312 | 292 |
| smx:SM11_pC0058 | 432 | 104.3 | 0.297 | 286 |
| smx:SM11_pC0061 | 425 | 102.7 | 0.314 | 296 |
| smx:SM11_chr0616 | 423 | 102.2 | 0.308 | 289 |
| smx:SM11_pC1270 | 409 | 99.0 | 0.318 | 289 |
| smx:SM11_pC0482 | 403 | 97.7 | 0.315 | 286 |
| smx:SM11_pD0919 | 360 | 87.9 | 0.267 | 292 |
| smx:SM11_pC1648 | 359 | 87.6 | 0.353 | 190 |
| smx:SM11_chr0061 | 354 | 86.5 | 0.250 | 300 |
| smx:SM11_chr3089 | 340 | 83.3 | 0.275 | 302 |
| smx:SM11_pD0799 | 323 | 79.4 | 0.282 | 287 |
| smx:SM11_chr1999 | 323 | 79.4 | 0.269 | 297 |
| smx:SM11_pC0539 | 318 | 78.3 | 0.290 | 272 |
| smx:SM11_chr0430 | 308 | 76.0 | 0.283 | 254 |
| smx:SM11_chr2240 | 307 | 75.8 | 0.268 | 261 |
| smx:SM11_pC0773 | 307 | 75.8 | 0.258 | 283 |
| smx:SM11_pC0837 | 298 | 73.7 | 0.259 | 270 |
| smx:SM11_pC1421 | 297 | 73.5 | 0.259 | 290 |
| smx:SM11_pC0517 | 290 | 71.9 | 0.269 | 279 |
| smx:SM11_pC0432 | 287 | 71.2 | 0.267 | 288 |
| smx:SM11_pD0043 | 276 | 68.7 | 0.244 | 283 |
| smx:SM11_chr3045 | 274 | 68.3 | 0.225 | 285 |
| smx:SM11_pC1735 | 270 | 67.3 | 0.283 | 272 |
| smx:SM11_pD1135 | 270 | 67.3 | 0.249 | 301 |
| smx:SM11_chr2758 | 268 | 66.9 | 0.276 | 293 |
| smx:SM11_chr0858 | 263 | 65.7 | 0.266 | 259 |
| smx:SM11_chr3148 | 261 | 65.3 | 0.259 | 294 |
| smx:SM11_pD0663 | 260 | 65.1 | 0.251 | 267 |
| smx:SM11_chr2603 | 259 | 64.8 | 0.267 | 262 |
| smx:SM11_pD1399 | 256 | 64.1 | 0.263 | 243 |
| smx:SM11_pC1472 | 252 | 63.2 | 0.249 | 269 |
| smx:SM11_pC0469 | 246 | 61.9 | 0.236 | 296 |
| smx:SM11_chr3005 | 245 | 61.6 | 0.282 | 195 |
| smx:SM11_pC0629 | 243 | 61.2 | 0.247 | 263 |
| smx:SM11_pD0434 | 240 | 60.5 | 0.282 | 273 |
| smx:SM11_pC1431 | 232 | 58.7 | 0.256 | 262 |
| smx:SM11_chr3766 | 223 | 56.6 | 0.264 | 239 |
| smx:SM11_pC0767 | 223 | 56.6 | 0.241 | 266 |
| smx:SM11_pC0362 | 222 | 56.4 | 0.247 | 271 |
| smx:SM11_chr1337 | 216 | 55.0 | 0.285 | 172 |
| smx:SM11_pC1537 | 214 | 54.6 | 0.250 | 272 |
| smx:SM11_pC0454 | 210 | 53.7 | 0.295 | 176 |
| smx:SM11_pD0229 | 210 | 53.7 | 0.262 | 279 |
| smx:SM11_chr0372 | 205 | 52.5 | 0.253 | 186 |
| smx:SM11_chr0996 | 204 | 52.3 | 0.262 | 271 |
| smx:SM11_pC0658 | 201 | 51.6 | 0.266 | 192 |
| smx:SM11_chr0419 | 198 | 50.9 | 0.291 | 141 |
| smx:SM11_chr2923 | 198 | 50.9 | 0.289 | 149 |
| smx:SM11_pD0038 | 184 | 47.7 | 0.288 | 250 |
| smx:SM11_chr0417 | 184 | 47.7 | 0.258 | 275 |
| smx:SM11_pC0568 | 180 | 46.8 | 0.255 | 251 |
| smx:SM11_pC0489 | 177 | 46.1 | 0.269 | 171 |
| smx:SM11_chr3548 | 171 | 44.8 | 0.276 | 181 |
| smx:SM11_pC0509 | 171 | 44.8 | 0.253 | 293 |
| smx:SM11_chr0982 | 161 | 42.5 | 0.256 | 176 |
| smx:SM11_pC0543 | 160 | 42.3 | 0.288 | 132 |
| smx:SM11_pD0132 | 158 | 41.8 | 0.360 | 75 |
| smx:SM11_pD0196 | 156 | 41.4 | 0.293 | 147 |
| smx:SM11_pC0010 | 146 | 39.1 | 0.361 | 72 |
| smx:SM11_pC0036 | 132 | 35.9 | 0.417 | 60 |
| smx:SM11_pC1649 | 125 | 34.3 | 0.356 | 73 |