| Entry | SW_score | bits | identity | overlap |
| cyp:PCC8801_0035 | 202 | 51.8 | 0.417 | 103 |
| cyp:PCC8801_0281 | 135 | 36.6 | 0.411 | 73 |
| cyp:PCC8801_0382 | 115 | 32.0 | 0.352 | 54 |
| cyp:PCC8801_0446 | 248 | 62.3 | 0.241 | 353 |
| cyp:PCC8801_0881 | 263 | 65.7 | 0.270 | 423 |
| cyp:PCC8801_0903 | 223 | 56.6 | 0.306 | 222 |
| cyp:PCC8801_1342 | 120 | 33.1 | 0.394 | 66 |
| cyp:PCC8801_1555 | 171 | 44.8 | 0.265 | 279 |
| cyp:PCC8801_1573 | 164 | 43.2 | 0.292 | 226 |
| cyp:PCC8801_1600 | 108 | 30.4 | 0.444 | 36 |
| cyp:PCC8801_2199 | 210 | 53.7 | 0.268 | 254 |
| cyp:PCC8801_2697 | 103 | 29.3 | 0.311 | 61 |
| cyp:PCC8801_2710 | 207 | 53.0 | 0.264 | 296 |
| cyp:PCC8801_2777 | 155 | 41.1 | 0.291 | 127 |
| cyp:PCC8801_3033 | 238 | 60.0 | 0.264 | 258 |
| cyp:PCC8801_3278 | 178 | 46.4 | 0.268 | 231 |
| cyp:PCC8801_3295 | 109 | 30.6 | 0.328 | 116 |
| cyp:PCC8801_3963 | 110 | 30.9 | 0.324 | 71 |
| cyp:PCC8801_4170 | 150 | 40.0 | 0.302 | 106 |