| Entry | SW_score | bits | identity | overlap |
| sce:YGL163C | 710 | 167.6 | 0.265 | 916 |
| sce:YJR035W | 695 | 164.2 | 0.230 | 1058 |
| sce:YFR038W | 678 | 160.3 | 0.253 | 931 |
| sce:YBR073W | 653 | 154.6 | 0.251 | 893 |
| sce:YAL019W | 601 | 142.8 | 0.240 | 1198 |
| sce:YDR334W | 577 | 137.3 | 0.225 | 1067 |
| sce:YPL082C | 536 | 128.0 | 0.252 | 731 |
| sce:YOR290C | 535 | 127.7 | 0.242 | 884 |
| sce:YIL126W | 532 | 127.1 | 0.247 | 843 |
| sce:YOR304W | 531 | 126.8 | 0.251 | 910 |
| sce:YER164W | 524 | 125.2 | 0.225 | 1146 |
| sce:YBR245C | 512 | 122.5 | 0.241 | 730 |
| sce:YBR114W | 479 | 115.0 | 0.232 | 867 |
| sce:YGL150C | 459 | 110.4 | 0.199 | 1494 |
| sce:YOR191W | 395 | 95.8 | 0.202 | 1647 |
| sce:YLR032W | 390 | 94.7 | 0.224 | 617 |
| sce:YFR016C | 354 | 86.5 | 0.206 | 1116 |
| sce:YJL076W | 329 | 80.8 | 0.210 | 955 |
| sce:YDL058W | 324 | 79.7 | 0.199 | 1117 |
| sce:YKR095W | 311 | 76.7 | 0.208 | 1233 |
| sce:YLR223C | 286 | 71.0 | 0.201 | 951 |
| sce:YDL223C | 284 | 70.5 | 0.184 | 1077 |
| sce:YLR106C | 283 | 70.3 | 0.210 | 537 |
| sce:YMR086W | 283 | 70.3 | 0.190 | 930 |
| sce:YDR464W | 269 | 67.1 | 0.209 | 1139 |
| sce:YGR196C | 254 | 63.7 | 0.231 | 550 |
| sce:YDR356W | 246 | 61.9 | 0.187 | 841 |
| sce:YMR219W | 245 | 61.6 | 0.207 | 1254 |
| sce:YMR273C | 243 | 61.2 | 0.205 | 829 |
| sce:YKR092C | 242 | 61.0 | 0.225 | 391 |
| sce:YML093W | 237 | 59.8 | 0.195 | 915 |
| sce:YIL149C | 235 | 59.4 | 0.188 | 1332 |
| sce:YDR365C | 233 | 58.9 | 0.225 | 542 |
| sce:YIL112W | 231 | 58.5 | 0.206 | 936 |
| sce:YOL138C | 218 | 55.5 | 0.217 | 674 |
| sce:YLR309C | 216 | 55.0 | 0.180 | 872 |
| sce:YER033C | 215 | 54.8 | 0.211 | 854 |
| sce:YHR077C | 214 | 54.6 | 0.261 | 176 |
| sce:YKL201C | 214 | 54.6 | 0.260 | 146 |
| sce:YNL091W | 214 | 54.6 | 0.216 | 476 |
| sce:YHR023W | 214 | 54.6 | 0.193 | 1106 |
| sce:YGR162W | 210 | 53.7 | 0.216 | 546 |
| sce:YML010W | 208 | 53.2 | 0.281 | 160 |
| sce:YGR130C | 204 | 52.3 | 0.189 | 826 |
| sce:YDR227W | 203 | 52.1 | 0.210 | 863 |
| sce:YLL021W | 203 | 52.1 | 0.194 | 1223 |
| sce:YGR116W | 202 | 51.8 | 0.244 | 353 |
| sce:YGR159C | 194 | 50.0 | 0.288 | 163 |
| sce:YLR449W | 190 | 49.1 | 0.259 | 212 |
| sce:YGR280C | 178 | 46.4 | 0.323 | 99 |
| sce:YDR170C | 178 | 46.4 | 0.256 | 156 |
| sce:YOR287C | 177 | 46.1 | 0.289 | 228 |
| sce:YJL115W | 169 | 44.3 | 0.270 | 148 |
| sce:YOR310C | 158 | 41.8 | 0.278 | 194 |
| sce:YPR148C | 152 | 40.4 | 0.265 | 162 |
| sce:YDR060W | 146 | 39.1 | 0.314 | 137 |
| sce:YGL081W | 127 | 34.7 | 0.301 | 123 |
| sce:YDR186C | 125 | 34.3 | 0.307 | 88 |
| sce:YKR072C | 123 | 33.8 | 0.333 | 42 |
| sce:YML072C | 120 | 33.1 | 0.460 | 50 |
| sce:YGL133W | 118 | 32.7 | 0.342 | 79 |
| sce:YLR103C | 114 | 31.8 | 0.319 | 94 |
| sce:YMR176W | 114 | 31.8 | 0.308 | 91 |
| sce:YOR211C | 112 | 31.3 | 0.500 | 26 |
| sce:YKL088W | 111 | 31.1 | 0.413 | 46 |
| sce:YJL148W | 108 | 30.4 | 0.455 | 44 |
| sce:YLL022C | 105 | 29.7 | 0.314 | 70 |
| sce:YDR080W | 104 | 29.5 | 0.349 | 43 |
| sce:YPR031W | 104 | 29.5 | 0.326 | 92 |
| sce:YLR451W | 104 | 29.5 | 0.310 | 58 |
| sce:YKR048C | 103 | 29.3 | 0.500 | 28 |
| sce:YBL057C | 103 | 29.3 | 0.317 | 63 |
| sce:YMR129W | 103 | 29.3 | 0.306 | 72 |
| sce:YCR057C | 103 | 29.3 | 0.302 | 86 |
| sce:YNL255C | 102 | 29.0 | 0.328 | 61 |
| sce:YPL263C | 102 | 29.0 | 0.314 | 51 |
| sce:YJR132W | 101 | 28.8 | 0.333 | 117 |
| sce:YIR025W | 100 | 28.6 | 0.355 | 62 |