| Entry | SW_score | bits | identity | overlap |
| syf:Synpcc7942_0884 | 1879 | 434.1 | 0.680 | 410 |
| syf:Synpcc7942_1525 | 350 | 85.6 | 0.285 | 355 |
| syf:Synpcc7942_2020 | 280 | 69.6 | 0.263 | 407 |
| syf:Synpcc7942_0479 | 256 | 64.1 | 0.275 | 247 |
| syf:Synpcc7942_2365 | 212 | 54.1 | 0.269 | 275 |
| syf:Synpcc7942_0885 | 198 | 50.9 | 0.328 | 128 |
| syf:Synpcc7942_0295 | 102 | 29.0 | 0.303 | 76 |