| Entry | SW_score | bits | identity | overlap |
| hcv:FTV88_1361 | 250 | 62.8 | 0.180 | 672 |
| hcv:FTV88_2025 | 301 | 74.4 | 0.209 | 765 |
| hcv:FTV88_2193 | 216 | 55.0 | 0.226 | 296 |
| hcv:FTV88_2526 | 285 | 70.8 | 0.228 | 742 |
| hcv:FTV88_2539 | 284 | 70.5 | 0.219 | 942 |
| hcv:FTV88_2788 | 112 | 31.3 | 0.337 | 104 |
| hcv:FTV88_2944 | 205 | 52.5 | 0.209 | 469 |