GFIT result for T00526

[Motif] [Align] [N-J Tree] [Dendrogram] [Gene Cluster]

rci:RCIX1968
(353 a.a.)
 
--
 
    predicted ATP-dependent DNA ligase
DBHit(Length)Over-
lap
Ident.
(%)
ScoremarginPara-
log
Cont.KOOrthCurrent Annotation
> mpd:MCP_2126(334)33257.21301(1002)1->    putative ATP-dependent DNA ligase
> grs:C7S20_03830(333)33253.01245(618)0->    ATP-dependent DNA ligase
> tee:Tel_12770(335)33253.91224
0-> K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mav:MAV_3148(332)33353.81213(670)3--    ligD; DNA polymerase LigD, ligase domain
> mava:LA64_14300(332)33353.81213(665)2--    ATP-dependent DNA ligase
> mavd:NF84_14150(332)33353.81213(665)2--    ATP-dependent DNA ligase
> mavr:LA63_14305(332)33353.81213(665)3--    ATP-dependent DNA ligase
> mao:MAP4_2518(332)33353.51208(665)3--    ATP-dependent DNA ligase
> mavi:RC58_12520(332)33353.51208(665)3--    ATP-dependent DNA ligase
> mavu:RE97_12540(332)33353.51208(665)3--    ATP-dependent DNA ligase
> mpa:MAP_1329c(354)33554.01207(664)0--    hypothetical protein
> mmal:CKJ54_13680(332)33153.81198(669)0->    ATP-dependent DNA ligase
> mia:OCU_29800(332)33153.51181(643)3->    DNA polymerase LigD ligase subunit
> mchi:AN480_15575(332)33153.51180(642)0->    ATP-dependent DNA ligase
> myo:OEM_29110(332)33153.81180(642)3->    DNA polymerase LigD ligase subunit
> mie:LG41_14150(332)33152.91171(633)4->    ATP-dependent DNA ligase
> mir:OCQ_30550(332)33152.91171(633)3->    DNA polymerase LigD ligase subunit
> mit:OCO_29890(332)33152.91171(633)3->    DNA polymerase LigD ligase subunit
> mmm:W7S_14830(332)33152.91171(633)3->    DNA polymerase LigD ligase subunit
> sen:SACE_5682(333)33253.01144(742)7--    DNA ligase, ATP-dependent
> amd:AMED_5204(314)31255.11131(607)6->    lig; ATP-dependent DNA ligase
> amm:AMES_5142(314)31255.11131(607)6->    lig; ATP-dependent DNA ligase
> amn:RAM_26510(314)31255.11131(607)6->    ATP-dependent DNA ligase
> amz:B737_5142(314)31255.11131(607)6->    lig; ATP-dependent DNA ligase
> bbt:BBta_7782(351)33949.91124(599)3->    putative ATP-dependent DNA ligase
> amyc:CU254_25885(314)31253.81119(641)0->    ATP-dependent DNA ligase
> spun:BFF78_39610(336)33352.31117(653)0-- K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> svl:Strvi_5345(337)33651.51081(721)8--    DNA polymerase LigD, ligase domain protein
> lok:Loa_02405(334)33549.91079(339)1--    DNA polymerase LigD, ligase domain protein
> sct:SCAT_5457(313)31552.41078(762)3--    ligD; DNA polymerase LigD, ligase domain
> scy:SCATT_54560(327)31552.41078(762)4--    DNA polymerase LigD ligase subunit
> ngv:CDO52_22145(317)31350.81062(774)0->    ATP-dependent DNA ligase
> dpb:BABL1_gene_166(342)34046.21056(806)0->    ATP-dependent DNA ligase
> sals:SLNWT_5554(334)33449.71030(659)5-- K01971  ligD DNA polymerase LigD, ligase domain-containing protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pmad:BAY61_01235(306)30552.11025(448)0->    ATP-dependent DNA ligase
> saln:SALB1_1757(336)32051.91023(764)0-> K01971  ligD ATP-dependent DNA ligase clustered with Ku protein, LigD; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hbe:BEI_0347(334)33448.81014
0-> K01971  ligD ligD2; ATP-dependent DNA ligase clustered with Ku protein, LigD; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> blin:BLSMQ_1369(316)31547.6948(455)0->    ATP-dependent DNA ligase
> puv:PUV_10690(794)31843.1829
0-- K01971  ligD putative DNA ligase-like protein Rv0938/MT0965; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hco:LOKO_00656(851)34340.5808
0-- K01971  ligD Putative DNA ligase-like protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> abac:LuPra_02363(284)31243.3805(51)0-> K01971  ligD Putative DNA ligase-like protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cbc:CbuK_0042(815)32339.9805
0-- K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cbg:CbuG_0044(815)32339.9805
0-- K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cbs:COXBURSA331_A2135(815)32339.9805
0-- K01971  ligD ligD; DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cbu:CBU_1934(815)32339.9805
0-- K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ruf:TH63_03090(857)31743.2787
0-- K01971  ligD DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> scu:SCE1572_21330(687)31643.4782(425)47-- K01971  ligD hypothetical protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ccro:CMC5_051300(404)31541.6780(576)7-- K01971  ligD ligD; DNA polymerase LigD, ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> tmc:LMI_2571(822)32838.1779
0-- K01971  ligD ligD; DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> adt:APT56_19400(885)33142.0776(511)0-- K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> axo:NH44784_059851(870)31942.6775(484)23-- K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> nmv:NITMOv2_2657(895)33041.2775(423)3-- K01971  ligD ykoU; DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> nmu:Nmul_A1177(853)32241.6773
0-- K01971  ligD ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> scl:sce3523(762)31943.6771(396)82-- K01971  ligD unnamed protein product; High confidence in function and specificity; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> axn:AX27061_4222(874)31942.3770(478)35-- K01971  ligD ATP-dependent DNA ligase clustered with Ku protein, LigD; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> axx:ERS451415_04244(874)31942.3770(478)0-- K01971  ligD Putative DNA ligase-like protein Rv0938/MT0965; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> llu:AKJ09_09606(855)32442.0770(211)9-- K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> mei:Msip34_2574(870)32141.7768
1-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> axs:LH59_19425(868)33241.9767(485)19-- K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> nko:Niako_1577(934)31740.7767(139)5-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> aba:Acid345_0779(608)32140.8764(362)4-- K01971  ligD ATP dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> fpsz:AMR72_01115(881)31742.3764(129)0-- K01971  ligD hypothetical protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> nlc:EBAPG3_007500(847)32741.0764
0-- K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> nja:NSJP_1173(864)33442.8763(416)0-- K01971  ligD ligD; Multifunctional non-homologous end joining protein LigD [Includes: 3'-phosphoesterase; DNA ligase D; DNA repair polymerase]; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> geo:Geob_0336(829)33539.7761
1-- K01971  ligD ligD; DNA ligase D, ATP-dependent; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> lha:LHA_0995(831)32239.1760(530)1-- K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> gbm:Gbem_0128(871)31543.2757
2-- K01971  ligD ligD; DNA ligase D, ATP-dependent; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> geb:GM18_0111(892)31842.8757
2-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> gem:GM21_0109(872)31742.6752
1-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ote:Oter_4309(603)32943.2751(400)5-> K01971  ligD DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pch:EY04_14070(844)32840.9750(649)1-- K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pnl:PNK_2195(623)31140.2748(442)0-- K01971  ligD putative ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> rta:Rta_07780(819)32139.6748(356)29-- K01971  ligD ATP-dependent DNA ligase-like protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ade:Adeh_0784(658)32140.8745(402)105-- K01971  ligD ATP dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ank:AnaeK_0832(684)32341.2745(402)136-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> aav:Aave_2519(939)32939.5742(498)85-- K01971  ligD ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ddh:Desde_0514(812)31139.9740
0-- K01971  ligD ATP-dependent DNA ligase LigD polymerase module; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> vap:Vapar_1660(847)32338.7740(477)9-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pcp:JM49_15955(841)31541.6738
1-- K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> aaa:Acav_2693(936)32939.2736(485)28-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> chu:CHU_2837(896)32738.8736(514)4-- K01971  ligD ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> bpt:Bpet3441(822)35236.4735
1-- K01971  ligD unnamed protein product; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hse:Hsero_2271(856)34639.6734(529)1-- K01971  ligD ATP-dependent DNA ligase protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> hsz:ACP92_11350(856)34639.6734(529)0-- K01971  ligD DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> afw:Anae109_0939(847)30941.7733(1)78-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> fla:SY85_09220(907)32539.1732(461)0-- K01971  ligD DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> simp:C6571_07475(862)32241.0732
0-- K01971  ligD ligD; DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> vpd:VAPA_1c17500(851)32338.1730(442)4-- K01971  ligD putative DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> acp:A2cp1_0836(683)32340.6729(371)136-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cpi:Cpin_0998(861)32939.8729(92)3-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cpy:Cphy_1729(813)31240.4728
0-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> dpy:BA022_07305(837)31938.9725(465)0-- K01971  ligD ligD; ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> vbh:CMV30_09300(544)32941.0725(445)0-> K01971  ligD ATP-dependent DNA ligase; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> ajs:Ajs_2523(837)31938.9723(462)10-- K01971  ligD ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> cbae:COR50_04325(644)31539.4721
0-- K01971  ligD ligD; DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> gba:J421_4951(349)31840.9721(40)15-- K01971  ligD DNA polymerase LigD, ligase domain protein; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> nia:A8C56_12060(855)31041.3721(423)0-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> pfe:PSF113_2933(871)31941.1721(167)2-- K01971  ligD ligD2; LigD; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
> brad:BF49_3871(315)31839.3720(168)0--    ATPdependent DNA ligase EC 6511
> ccel:CCDG5_0620(826)31140.5720
0-- K01971  ligD DNA ligase D; K01971 bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
... ... ...