Oryza sativa japonica (Japanese rice) (RAPDB): Os06t0248200-01
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Entry
Os06t0248200-01 CDS
T02163
Symbol
Os06g0248200
Name
(RAP-DB) Hypothetical conserved gene.
KO
K14407
cleavage stimulation factor subunit 2
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os06t0248200-01 (Os06g0248200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os06t0248200-01 (Os06g0248200)
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
Os06t0248200-01 (Os06g0248200)
U7-dependent histone pre-mRNA processing factors
Os06t0248200-01 (Os06g0248200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
Motif
Other DBs
RAP-DB:
Os06t0248200-01
LinkDB
All DBs
Position
chr06:join(7693213..7693464,7693648..7693890)
AA seq
164 aa
AA seq
DB search
MAVPLPEPAAAMADVNCRCSRVVYVGNIAFHATEAELRDACELIGPVRSLRLAALDPATN
KRKGYAFVEYADDETARSALRNLHSRQEVREMVAALEATEQLKIPGLGTAMEQAQRLLEM
FAADEEEVARKKLKRASDEEHAKQSKVVGVDGVVKASSRIVPCF
NT seq
495 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgccactgcccgagcccgctgccgccatggccgacgtgaactgccgctgcagc
cgcgtcgtctacgtcggcaacatcgccttccacgccaccgaggccgagctccgcgacgcc
tgcgagctcatcggccccgtccgctccctccgcctcgccgccctcgacccggccaccaac
aagcgcaagggctacgccttcgtcgagtacgccgacgacgagacggcccgcagcgccctc
cgcaacctccactcgaggcaggaggtgcgggagatggtggccgcgctggaggccaccgag
cagctgaagattcccgggctgggcaccgccatggagcaggcgcagcggctgctggagatg
ttcgccgccgacgaggaggaggtggccaggaagaagctgaagcgcgcgagcgatgaagag
cacgcgaagcagagcaaggtggtcggggttgatggcgtcgtcaaggcttcttcacgcatc
gtcccctgcttctga
DBGET
integrated database retrieval system