Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0159900-01
Help
Entry
Os08t0159900-01 CDS
T02163
Symbol
Os08g0159900
Name
(RAP-DB) DEAD-like helicase, N-terminal domain containing protein.
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os08t0159900-01 (Os08g0159900)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os08t0159900-01 (Os08g0159900)
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Os08t0159900-01 (Os08g0159900)
Spliceosome [BR:
dosa03041
]
Complex A
U2 snRNP components
U2 related factors
Os08t0159900-01 (Os08g0159900)
Complex B
Os08t0159900-01 (Os08g0159900)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
RAP-DB:
Os08t0159900-01
LinkDB
All DBs
Position
chr08:complement(3515530..3518679)
AA seq
1049 aa
AA seq
DB search
MGSSDEAGSSKHHRRDKEKDRERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDRDRERR
HREKERDREERKAREREEREKEKERERARRREERDREERSRRREAAAEEEEEDVDRDRKR
RRRSSHHHHHHRDAEPEGPASGAREEEVVDVEEAERRRQKKKEEEQKQLDEEMETRRRRI
KEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDEEGNQE
DGKKSDDNGGSGAGAMDVDVPNGGDNANGANAMDEDEIDPLDAFMNSMVLPEVAKLESMP
AANVDDKNDKSAKDAVTNGDKKGPKKVMGRIIQGEDSDSDYADDEDDEGGSEDEDDEEFM
KRVKKTKAEKLAIVDHSKIDYQPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVP
KPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVL
PMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQ
ISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQ
NTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFR
LLELLGEWFDKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSN
VCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEE
RYAPDLVKALELSEQAVPEDLKGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARK
SAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIAAAQAAAAMVAAKAASNANQQ
TQGTSVGPLLPLAIASNTQNNEATARALQAAFNIQQNLARIQAHAVPEHYEAELEINDFP
QNARWKITHKETLGPIQEWTGAAITTRGTFFPQGKIVGANERKLYLFIEGPTELSVKKAK
AELKRVLEDCANHALNLPGSAQTGKYSVI
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggggtctagcgacgaggccggctcctccaagcaccaccgccgcgacaaggagaaggac
cgcgagcggtcctcctcccgccaccaccgcgaccgcgaccgcgagagatcctcctctcgc
caccaccaccgcgaggaccgggatgacgaccgggatcgggaccgggaccgggagcgccgc
cacagggagaaggagcgggatcgcgaggagcggaaggcgcgggagcgggaggagcgggag
aaggagaaggagagggagcgtgcgcggcggcgcgaggagagggaccgcgaggagaggtcg
aggaggcgggaggcggcggcggaggaggaggaggaggatgtggaccgcgaccgcaagcgc
cgccgccggtcgtcgcaccaccaccaccaccaccgcgacgcggagccggaggggccggct
tcgggggccagggaggaggaggtggtggatgtggaggaggccgagaggcggcgccagaag
aagaaggaggaggagcagaagcagctggacgaagagatggagacgcggcgccgccgcatc
aaggagtggcaggagatgaagcgccgcgaggaggagacgaagcgccgcgagcaggaggag
gccggagttggcacctcagccgccgccgccgcggcccccgcagaagcagaagatggcggc
aatgccgggaagaagtggaccttggatggcgaggagtctgatgaggaggggaaccaagag
gatggtaagaaatccgatgataatggtggttctggtgccggtgccatggacgttgatgtt
ccaaatgggggtgataatgcaaacggcgccaatgctatggatgaagatgagattgatccg
cttgatgcgttcatgaactcgatggtattgcctgaggtcgcaaagcttgagagcatgcct
gctgccaatgtggatgacaagaatgataagagtgctaaggatgctgtgactaatggggat
aaaaaggggccaaagaaggtgatggggagaattatacaaggagaagactcagactcggat
tatgcagatgacgaggatgatgagggtggttccgaagatgaggatgatgaggagttcatg
aaacgtgtcaagaagacaaaggcagaaaagttggctattgttgaccattctaagatcgac
taccagccgttccggaagaatttctacattgaggtgaaggatattacaaagatggcagct
gaggaagtggcagcttatcggaagcagttggagctcaaggtgcatgggaaagatgtaccc
aagccaataaagacatgggtgcagagtgggcttaccagcaagctccttgatacaatcaag
aaacttggtttcgagaaaccgatgtctatacaggcacaagcactgccgatcataatgagt
gggcgtgattgtataggaattgcaaagactggatcaggcaagactctagcatttgtcctg
cctatgctgaggcatgtcaaagatcagccggctgttgttcctggagatggcccaattggg
cttataatggctcctactagagagcttgtggtgcagatacattcagacattaagaagttt
tcgaaggcgcttggcatcaactgtgttgctatctatggaggttctggagttgcccagcag
atcagtgaactgaagaggggtgctgaaattgttgtttgtacaccaggcaggatgattgat
attctttgcacaagcagtgggaagattactaatcttcggagagttacattcttggtgatg
gatgaagctgataggatgtttgatatgggttttgagcctcagattactcggatagttcag
aatactcgtccagataggcagacagttcttttctcagccacttttccacgtcaggtggag
atactggcccgtaaggtgctgacaaagcctgttgagatccaggtgggtgggaggagtgtc
gtcaacaaagatatcacacaactggttgaggtgcggccagaaaatgagaggttctttagg
ctgttggagctgcttggagagtggtttgataaaggtaaaattcttgtttttgtccattca
caagataaatgtgattctctactcaaagacctgttccagcatggatatccatgcctatcc
ctgcatggtgggaaagaccagactgaccgtgaatcaacactagctgatttcaagagcaat
gtgtgcagcttgctgattgctaccagtgttgctgctaggggtttagatgtcaaggagctt
gagcttgttgtgaattatgatgtcccgaaccactatgaggattatgttcatcgtgttgga
cgaactggacgtgctgggaggaagggatttgccgtgacttttatttctgaggaagaggag
cgttatgctccagaccttgttaaagctttggagctctcagagcaggctgttccagaggac
ctgaaaggtctagctgatcgttttatggcaaaggtgaagcagggaacagagcaggcccat
ggaacaggatatggtggaagcggtttcaagttcaatgaagaggaggatgaagcacggaaa
tctgcaaagaaggctcaggcaagggaatatggttatgaggaggacaagtcagattcagat
tctgatgaggaaggaggggttcgtaaggcgggaggtgaccttgcggcacaagctattgct
gctgctcaagctgctgctgctatggttgcagcaaaggctgctagcaatgccaaccagcaa
acacaaggcacttctgtagggcccttgcttcctctagccattgcttcaaacacacagaat
aacgaggccacagcacgtgcactgcaggctgcatttaacatacagcaaaatctggcaagg
atacaagcacatgcagtcccagaacattatgaggctgagcttgagattaatgatttccca
caaaatgcccgctggaagatcactcacaaagaaacattgggtcctatccaggaatggacg
ggtgctgcaatcactacaaggggaaccttttttcctcaaggaaaaattgttggtgctaat
gaacgcaagctgtacctgttcatagagggccccactgagctatctgtcaagaaggcgaaa
gcagaattgaagcgtgtccttgaagattgtgccaaccatgctctgaaccttcctggttct
gcccaaactggaaagtactctgttatttga
DBGET
integrated database retrieval system