Prescottella defluvii: P9209_26800
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Entry
P9209_26800 CDS
T09037
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pdef
Prescottella defluvii
Pathway
pdef03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P9209_26800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdef03400
]
P9209_26800
Enzymes [BR:
pdef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P9209_26800
DNA repair and recombination proteins [BR:
pdef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P9209_26800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WFR72092
LinkDB
All DBs
Position
complement(5140887..5143124)
Genome browser
AA seq
745 aa
AA seq
DB search
MPTRTIDGRRVAVSRLDKVLYPATGTAKGEVIDYYTAIAPAMLPHVVDRPVTRKRWPNGV
DEPSFFEKNLAASAPQWLTRHAVHHKDRTVRYPIVDSTAALVWIGQQAALEVHVPQWRFV
DGEPGPATRLVFDLDPGEGAGLSECARVAFAVRDLVATLGWTAYPVTSGSKGIHVYVPLD
RTLAPGGASTVAKKVATTLEQLHPDLVTATMSKSVRGGRVFLDWSQNNPAKTTIAPYSMR
GRTHPTVAAPRRWDELEDPDLRHLRFDEVLKRYRRDGDLLADLDAPWDALSEYRRKRDPE
RTPEPIPQTEAEGGEGNSFVIQEHHARRLHYDFRLERDGVMVSWAVPRGIPTSPKENRLA
VHTEDHPLEYASFSGSIPKGEYGGGTVSIWDAGTYEPVKWLDDEVIVRLYGERVQGRFAL
IRTEGDQWLIHLMRDDGDDRDFPRGLRPMLASAGSLDGLDPDEWAFEGKWDGIRLIVEFD
GETVTLRGRAGNDVTDRYPALQSLTRALDGHRVVLDGEVVSLDSAGRTSFTGLQAGGEPR
FWAFDILHLDGVSLLRKRYDDRRRVLDALAAAVDELVVPPQLTGSVPEVVEQSGDLEGVV
AKRRDSVYLPGKRGSGWIKTKNWLTQEAVIGGWRRGRGGRDGRLGSLLLGIPGDDGLRYI
GRVGTGFSESELDRLGALLAPLKRRTSPFAGDVPDADRRETVWVTPKIVGEVRFRGRTDA
GRLRHPSWRGVRDDKTPDDVREESG
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
gtgccgacccgcaccatcgacggccgtcgagtggccgtgagcaggctcgacaaggtgctg
taccccgccacgggcaccgccaagggcgaggtgatcgactactacaccgcgatcgcgccc
gcgatgctcccgcacgtcgtcgaccgtccggtcacccgcaaacggtggccgaacggcgtc
gacgagccgtcgttcttcgagaagaacctcgctgcgtccgcgccgcagtggctcacccgg
cacgccgtccaccacaaggaccgcaccgtgcgctacccgatcgtcgactctacggcggcg
ctcgtgtggatcggtcagcaggcggcgctggaagtgcatgtcccgcaatggcgattcgtc
gacggtgagcccgggccggcgacccggctggtgttcgacctcgacccgggcgagggggcc
ggcctgtccgagtgcgcgcgggtggcgttcgcggtgcgcgatctcgtggcgacgctgggg
tggacggcgtacccggtgacgagcggcagcaagggcatccacgtctacgtgccgctggac
cggacgctggccccgggcggcgcgtcgaccgtcgccaagaaggtggcgacgaccctcgaa
cagttgcatcccgacctggtgaccgcgacgatgtcgaagtcggtgcgcggcgggcgggtc
ttcctggactggagccagaacaacccggccaagaccacgatcgcgccgtactcgatgcgc
gggcgcacccatccgaccgtcgcggcgccgcgacgctgggacgagctcgaggatccggat
ctgaggcacctgcgattcgacgaggtgctcaagcggtaccggcgggacggggatctgctg
gccgatctcgacgcgccgtgggacgcgctgtccgagtatcgccgcaagcgcgatcccgaa
cgcacgcccgagccgattccgcagacggaagccgaaggcggtgagggaaattcgttcgtc
atccaggagcatcacgcccgacgtctgcactacgacttccggctcgaacgtgacggcgtg
atggtttcgtgggcggttccgcgcggcatcccgacgtccccgaaggagaaccgcctggcc
gtgcacaccgaggaccatcccctcgagtacgcgagcttctcgggttccatcccgaagggg
gagtacggcggcggcaccgtgagcatctgggacgccggcacgtacgagccggtcaagtgg
ctcgacgacgaggtgatcgtccggctgtacggcgagcgggtgcagggccggttcgcgctc
atccgcaccgagggcgaccagtggctgatacacctgatgcgggacgacggcgacgaccgc
gacttcccgcgcgggctgcggccgatgctggcgagcgcgggcagtctcgacggcctcgac
cccgacgagtgggcgttcgaggggaaatgggacggaatccgtctgatcgtcgagttcgac
ggcgagaccgtcaccctgcgcggccgcgcgggcaacgacgtgaccgaccggtatccggca
ctgcaatcgctgacccgcgccctcgacgggcaccgggtggtgctggacggggaggtggtc
agcctcgacagcgcggggcggacgagtttcacgggactgcaggccggcggtgaacccagg
ttctgggcgttcgacattctgcacctcgacggggtctcgttgctgcgcaagcggtacgac
gaccgccgccgcgtactcgacgcgctcgccgccgcggtcgacgagctcgtcgtcccgccg
cagctgacgggttcggtccccgaggtcgtcgaacagagcggtgatctcgagggagtcgtg
gccaagcgccgcgactcggtctacctgccgggcaagcgcggatcggggtggatcaagacc
aagaactggctcacccaggaggcggtcatcggcgggtggcgtcgcgggcgcggcggccga
gacgggcgcctcggctcgttgttgctggggattcccggcgacgacggcctgcgctacatc
ggacgggtcgggaccggcttcagcgaatcggagctcgaccgcctgggcgcgctactcgcc
ccgctgaaacgccggaccagtcccttcgccggcgacgtgcccgacgcggatcgtcgcgag
accgtgtgggtgaccccgaagatcgtgggggaggtgcggtttcggggccgcaccgacgcc
gggcggctgcgacacccgagctggcggggcgtgcgcgacgacaaaacccccgacgacgtg
cgggaggagtcgggctga
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