SSDB Best Search Result

Entry:bmr:BMI_II593 (162 a.a.)
Name:putative Holliday junction resolvase
KO:K07447 putative pre-16S rRNA nuclease

Search Result : 238 hits (reference genome only)

                 Entry                                       KO      len   SW-score  identity  overlap  
------------------------------------------------------------------ -------------------------------------
bms:BRA0597 conserved hypothetical protein TIGR00250    K07447     162     1036     1.000      162     
bmf:BAB2_0643 Conserved hypothetical protein 250:Ribonu K07447     162     1032     0.994      162     
bme:BMEII0672 DNA integration/recombination/invertion p K07447     162     1031     0.994      162     
ret:RHE_CH01852 probable holliday junction resolvase pr K07447     164      728     0.706      160     
atu:Atu1316 conserved hypothetical protein              K07447     159      717     0.731      156     
rle:RL2073 putative Holliday junction resolvase         K07447     164      706     0.694      160     
bhe:BH08220 hypothetical protein                        K07447     159      688     0.662      154     
sme:SMc01355 Conserved hypothetical protein             K07447     165      672     0.665      164     
mlo:mlr0681 hypothetical protein                        K07447     166      666     0.692      146     
pde:Pden_0510 Holliday junction resolvase YqgF          K07447     158      534     0.557      158     
sil:SPO2350 putative protein TIGR00250                  K07447     154      512     0.532      154     
rcp:RCAP_rcc02318 holliday junction resolvase YqgF      K07447     159      510     0.526      156     
rru:Rru_A3178 Holliday junction resolvase YqgF          K07447     161      493     0.506      156     
azc:AZC_2840 holliday junction resolvase                K07447     185      490     0.553      150     
rsp:RSP_2684 putative endonuclease involved in recombin K07447     160      477     0.538      158     
bja:blr5094 ORF_ID:blr5094; hypothetical protein        K07447     167      472     0.571      140     
xau:Xaut_3922 Holliday junction resolvase YqgF          K07447     176      468     0.519      160     
rpa:TX73_016100 Holliday junction resolvase RuvX        K07447     160      464     0.576      139     
ssy:SLG_20600 putative Holliday junction resolvase      K07447     158      462     0.553      141     
sno:Snov_1520 Holliday junction resolvase YqgF          K07447     160      462     0.520      150     
mea:Mex_1p3534 putative Holliday junction resolvase     K07447     165      457     0.522      134     
ccr:CC_2439 conserved hypothetical protein              K07447     156      434     0.490      153     
zmo:ZMO0785 Holliday junction resolvase YqgF            K07447     179      431     0.483      143     
nar:Saro_0906 Holliday junction resolvase YqgF          K07447     155      428     0.503      153     
swi:Swit_0601 Holliday junction resolvase YqgF          K07447     151      421     0.481      133     
sjp:SJA_C1-22120 putative Holliday junction resolvase   K07447     156      418     0.482      139     
sur:STAUR_6494 Holliday junction resolvase              K07447     150      401     0.515      130     
gox:GOX2385 DNA integration/recombination/invertion pro K07447     160      388     0.446      139     
mxa:MXAN_5823 conserved hypothetical protein TIGR00250  K07447     151      383     0.486      140     
mta:Moth_1640 Holliday junction resolvase YqgF          K07447     140      367     0.478      134     
dsy:DSY2418 hypothetical protein                        K07447     142      365     0.470      134     
tex:Teth514_1491 Holliday junction resolvase YqgF       K07447     139      362     0.439      132     
bce:BC4381 hypothetical Cytosolic Protein               K07447     137      362     0.500      138     
btk:BT9727_4119 conserved hypothetical protein, possibl K07447     137      359     0.496      137     
ban:BA_4614 RNAse H-fold protein YqgF                   K07447     137      359     0.496      137     
chy:CHY_0542 conserved hypothetical protein TIGR00250   K07447     138      356     0.477      132     
tte:TTE1250 predicted endonuclease involved in recombin K07447     139      354     0.439      132     
cpe:CPE1778 conserved hypothetical protein              K07447     137      354     0.448      134     
cdf:CD630_12850 putative Holliday junction resolvase    K07447     141      349     0.500      132     
bpf:BpOF4_11875 hypothetical protein                    K07447     139      346     0.482      137     
bsu:BSU27390 Holliday junction resolvase                K07447     138      345     0.426      136     
smu:SMU_2078c conserved hypothetical protein            K07447     139      342     0.456      136     
gtn:GTNG_2487 Conserved hypothetical protein            K07447     138      333     0.481      135     
ser:SERP1180 conserved hypothetical protein TIGR00250   K07447     142      333     0.423      137     
lmo:lmo1502 Holliday junction resolvase                 K07447     138      332     0.445      137     
lin:lin1537 similar to unknown proteins                 K07447     138      332     0.445      137     
bha:BH1269 BH1269; unknown conserved protein            K07447     140      332     0.456      136     
afn:Acfer_0897 Holliday junction resolvase YqgF         K07447     139      331     0.436      140     
cbo:CBO2562 conserved hypothetical protein              K07447     137      327     0.418      134     
oih:OB2007 hypothetical conserved protein               K07447     137      322     0.422      135     
spr:spr0176 Conserved hypothetical protein              K07447     139      322     0.442      138     
sao:SAOUHSC_01720 Holliday junction resolvase-like prot K07447     142      321     0.410      139     
ttm:Tthe_1264 Holliday junction resolvase YqgF          K07447     140      316     0.438      130     
pjd:Pjdr2_4344 Holliday junction resolvase YqgF         K07447     138      309     0.423      130     
cac:CA_C1680 Predicted endonuclease involved in recombi K07447     135      308     0.403      134     
cpy:Cphy_2297 Holliday junction resolvase YqgF          K07447     150      301     0.415      142     
spy:SPy_2113 conserved hypothetical protein             K07447     139      297     0.434      136     
ooe:OEOE_1165 RNase H-like ribonuclease                 K07447     144      295     0.429      133     
cth:Cthe_0153 Holliday junction resolvase YqgF          K07447     141      291     0.361      133     
efa:EF1203 conserved hypothetical protein TIGR00250     K07447     140      284     0.403      134     
scl:sce4544 putative Hollyday junction resolvase        K07447     163      278     0.385      143     
ppp:112276365 uncharacterized protein                              171      274     0.331      157     
sau:SA1444 conserved hypothetical protein               K07447     123      273     0.474      95      
lpl:lp_2274 endonuclease, resolvase                     K07447     144      269     0.419      136     
gvi:gll1132 ORF_ID:gll1132; hypothetical protein        K07447     156      265     0.406      133     
llm:llmg_0151 putative Hollyday junction resolvase      K07447     143      261     0.392      143     
ljo:LJ_0476 hypothetical protein                        K07447     143      261     0.366      134     
cst:CLOST_1487 putative Holliday junction resolvase     K07447     139      259     0.358      134     
lcb:LCABL_08480 Putative Holliday junction resolvase    K07447     144      258     0.404      136     
ava:Ava_3804 Holliday junction resolvase YqgF           K07447     151      257     0.369      130     
syc:syc1707_d hypothetical protein                      K07447     149      257     0.352      145     
ana:alr3100 hypothetical protein                        K07447     151      257     0.369      130     
rco:RC0455 unknown                                      K07447     154      255     0.318      151     
npu:Npun_F0324 Holliday junction resolvase YqgF         K07447     158      254     0.358      137     
elm:ELI_3739 RNAse H-fold protein YqgF                  K07447     178      253     0.400      130     
rpr:RP330 unknown                                       K07447     156      253     0.329      149     
syf:Synpcc7942_2398 Holliday junction resolvase YqgF    K07447     149      250     0.352      145     
anb:ANA_C12987 Holliday junction resolvase YqgF         K07447     158      249     0.362      130     
sat:SYN_01734 4-amino-4-deoxychorismate lyase           K07447     150      249     0.364      132     
cau:Caur_3849 Holliday junction resolvase YqgF          K07447     153      243     0.336      134     
syp:SYNPCC7002_A0946 YqgFc, likely ribonuclease with RN K07447     144      240     0.348      138     
kpn:KPN_03382 Holliday junction resolvase-like protein  K07447     138      239     0.338      133     
eco:b2949 ribonuclease H-like domain-containing nucleas K07447     138      239     0.338      133     
ecs:ECs_3825 holliday junction resolvase                K07447     138      237     0.346      133     
pam:PANA_3218 YqgF                                      K07447     138      236     0.372      129     
sfl:SF2940 Holliday junction resolvase-like protein     K07447     138      236     0.338      133     
sty:STY3250 conserved hypothetical protein              K07447     138      235     0.331      133     
stm:STM3097 putative endonuclease involved in recombina K07447     138      235     0.331      133     
ral:Rumal_2594 Holliday junction resolvase YqgF         K07447     140      230     0.331      130     
det:DET0051 conserved hypothetical protein TIGR00250    K07447     133      229     0.349      129     
nca:Noca_2408 Holliday junction resolvase YqgF          K07447     156      228     0.352      142     
ctb:CTL0436 putative Holliday junction resolvase        K07447     148      225     0.331      139     
blo:BL0881 possible endonuclease                        K07447     145      224     0.343      143     
ctr:CT_184 Holliday junction resolvase                  K07447     148      223     0.331      139     
yps:YPTB3209 Putative endonuclease involved in recombin K07447     140      222     0.323      133     
ypk:y3323 hypothetical protein                          K07447     140      221     0.323      133     
ype:YPO0937 conserved hypothetical protein              K07447     140      221     0.323      133     
syn:sll1547 hypothetical protein                        K07447     152      221     0.348      141     
yen:YE3429 conserved hypothetical protein               K07447     140      220     0.323      133     
rha:RHA1_ro07136 probable Holliday junction resolvase   K07447     178      220     0.338      160     
sro:Sros_6093 endonuclease involved in recombination-li K07447     163      219     0.366      131     
hdu:HD_1795 conserved hypothetical protein              K07447     138      219     0.295      132     
tel:tll2329 ORF_ID:tll2329; hypothetical protein        K07447     151      219     0.329      146     
smar:SM39_3621 putative holliday junction resolvase     K07447     140      218     0.328      134     
esa:ESA_00393 hypothetical protein                      K07447     138      218     0.316      133     
phe:Phep_0074 Holliday junction resolvase YqgF          K07447     138      215     0.309      136     
stp:Strop_1829 Holliday junction resolvase YqgF         K07447     153      215     0.365      137     
pae:PA0404 Holliday junction resolvase                  K07447     144      215     0.333      138     
nfa:NFA_36430 hypothetical protein                      K07447     180      214     0.353      156     
enc:ECL_04278 putative holliday junction resolvase      K07447     138      213     0.316      133     
lba:Lebu_1854 Holliday junction resolvase YqgF          K07447     138      212     0.343      134     
aae:aq_1498 hypothetical protein                        K07447     131      212     0.295      132     
rer:RER_29860 putative Holliday junction resolvase      K07447     177      211     0.357      157     
pfl:PFL_5831 conserved hypothetical protein             K07447     145      211     0.333      135     
ngo:NGO_0568 Holliday junction resolvase                K07447     151      210     0.331      136     
kfl:Kfla_4371 Holliday junction resolvase YqgF          K07447     152      209     0.386      145     
ppu:PP_4996 Putative Holliday junction resolvase        K07447     141      209     0.356      132     
cpn:CPn_0237 YggF Family hypothetical protein           K07447     151      208     0.329      143     
afr:AFE_3061 conserved hypothetical protein             K07447     143      207     0.357      126     
apl:APL_0231 putative Holliday junction resolvase       K07447     137      207     0.295      129     
mva:Mvan_2641 Holliday junction resolvase YqgF          K07447     175      205     0.357      140     
nme:NMB1337 conserved hypothetical protein              K07447     151      205     0.331      133     
ddd:Dda3937_00426 predicted Holliday junction resolvase K07447     143      204     0.299      134     
tfu:Tfu_2069 Holliday junction resolvase YqgF           K07447     159      204     0.379      145     
mar:MAE_50370 putative holliday junction resolvase      K07447     145      203     0.328      131     
son:SO_3347 Holliday junction resolvase YqgF            K07447     141      202     0.286      133     
cgl:Cgl1631 Predicted endonuclease involved in recombin K07447     182      200     0.338      145     
ase:ACPL_6489 putative holliday junction resolvase      K07447     153      199     0.343      137     
pmr:PMI0338 putative holliday junction resolvase        K07447     139      199     0.299      134     
bxe:Bxe_A3810 Conserved hypothetical protein 250        K07447     146      199     0.319      135     
ath:AT3G52905 Polynucleotidyl transferase, ribonuclease            170      199     0.336      143     
eam:EAMY_0596 putative Holliday junction resolvase      K07447     141      197     0.333      132     
bma:BMA1996 conserved hypothetical protein TIGR00250    K07447     146      197     0.322      143     
bps:BPSL2692 conserved hypothetical protein             K07447     146      197     0.322      143     
eca:ECA3926 conserved hypothetical protein              K07447     139      197     0.301      136     
neu:NE1667 conserved hypothetical protein               K07447     148      197     0.296      135     
lla:L141748 hypothetical protein                        K07447     119      197     0.388      98      
sml:Smlt1099 putative resolvase                         K07447     164      196     0.340      141     
hth:HTH_0479 Holliday junction resolvase                K07447     133      194     0.301      136     
csa:Csal_0059 Holliday junction resolvase YqgF          K07447     148      194     0.357      140     
hin:HI_0305 conserved hypothetical protein              K07447     139      194     0.292      130     
vvi:100266792 uncharacterized protein LOC100266792 isof            169      193     0.287      143     
cja:CJA_0084 conserved hypothetical protein TIGR00250   K07447     143      193     0.299      134     
zma:100217155 uncharacterized protein LOC100217155                 174      192     0.310      145     
avn:Avin_03140 Holliday junction resolvase-like protein K07447     142      192     0.312      128     
acb:A1S_0319 hypothetical protein                       K07447     146      192     0.290      131     
mle:ML0513 conserved hypothetical protein               K07447     184      192     0.326      135     
cdn:BN940_17796 Putative Holliday junction resolvase Yg K07447     178      191     0.336      143     
gpo:GPOL_c22300 putative holliday junction resolvase    K07447     151      191     0.381      134     
wol:WD_0143 conserved hypothetical protein TIGR00250    K07447     155      191     0.270      141     
cdi:DIP1349 Conserved hypothetical protein              K07447     183      191     0.325      160     
pst:PSPTO_5038 conserved protein of unknown function    K07447     146      191     0.341      132     
sgu:SGLAU_06040 Putative Holliday junction resolvase    K07447     154      190     0.304      138     
cps:CPS_1251 conserved hypothetical protein TIGR00250   K07447     148      190     0.301      136     
psb:Psyr_0484 Conserved hypothetical protein 250        K07447     146      190     0.323      130     
osa:4326892 uncharacterized protein isoform X1                     180      189     0.287      150     
pmu:PM1870 unknown                                      K07447     140      189     0.292      130     
mab:MAB_2850c Putative Holliday junction resolvase      K07447     166      188     0.331      151     
msm:MSMEG_3026 conserved hypothetical protein           K07447     170      188     0.340      150     
sma:SAVERM_6851 putative Holliday junction resolvase    K07447     156      188     0.304      138     
cte:CT0082 conserved hypothetical protein               K07447     142      188     0.309      136     
ksk:KSE_14210 putative Holliday junction resolvase      K07447     157      187     0.348      141     
mdm:103454749 uncharacterized protein LOC103454749                 170      186     0.327      147     
mmi:MMAR_2171 conserved hypothetical protein            K07447     170      186     0.347      147     
mul:MUL_1755 conserved hypothetical protein             K07447     170      186     0.347      147     
bfr:BF1683 putative endonuclease                        K07447     138      186     0.269      134     
cvi:CV_3910 conserved hypothetical protein              K07447     137      185     0.300      130     
mtu:Rv2554c Holliday junction resolvase                 K07447     170      185     0.354      147     
mtc:MT2631 conserved hypothetical protein               K07447     170      185     0.354      147     
rcu:8266467 putative pre-16S rRNA nuclease                         168      183     0.292      144     
dvu:DVU_3070 conserved hypothetical protein             K07447     142      183     0.333      132     
xfa:XF_2227 conserved hypothetical protein              K07447     155      183     0.326      135     
xcc:XCC2747 conserved hypothetical protein              K07447     155      183     0.336      137     
cit:102610643 uncharacterized protein LOC102610643 isof            180      182     0.326      135     
sct:SCAT_5324 putative Holliday junction resolvase      K07447     154      182     0.317      139     
csv:101219574 uncharacterized protein LOC101219574                 169      181     0.297      145     
sco:SCO1500 conserved hypothetical protein              K07447     167      181     0.296      152     
fnu:FN0698 DNA integration/recombination/invertion prot K07447     138      181     0.305      131     
nta:107773082 uncharacterized protein LOC107773082 isof            179      179     0.321      134     
pgi:PG_2202 conserved hypothetical protein TIGR00250    K07447     138      179     0.290      138     
sgr:SGR_6035 conserved hypothetical protein             K07447     161      178     0.283      138     
xom:XOO1310 conserved hypothetical protein              K07447     155      177     0.333      144     
xac:XAC2917 conserved hypothetical protein              K07447     155      177     0.336      137     
lpn:lpg0587 YqgF                                        K07447     142      176     0.295      139     
tth:TT_C1478 yqgf-Family protein                        K07447     135      174     0.273      132     
bpe:BP0320 conserved hypothetical protein               K07447     133      174     0.312      141     
cro:ROD_50371 putative holliday junction resolvase      K07447     122      172     0.359      92      
bvu:BVU_4062 putative endonuclease                      K07447     139      172     0.261      134     
dde:Dde_0314 Holliday junction resolvase YqgF           K07447     144      172     0.321      131     
aci:ACIAD0352 putative Holliday junction resolvase      K07447     147      172     0.282      131     
bth:BT_0419 putative endonuclease                       K07447     138      172     0.285      137     
hel:HELO_1060 probable pre-16S rRNA nuclease YqgF       K07447     143      171     0.331      133     
pdi:BDI_0655 putative endonuclease                      K07447     140      170     0.264      140     
sen:SACE_2053 Holliday junction resolvase YqgF          K07447     124      170     0.336      113     
eba:ebA1756 holliday junction resolvase                 K07447     156      169     0.327      147     
vvu:VV1_1528 Putative Holliday junction resolvase       K07447     140      169     0.269      130     
ccyc:SCMU_21880 putative pre-16S rRNA nuclease          K07447     183      168     0.314      137     
alv:Alvin_0201 Holliday junction resolvase YqgF         K07447     135      168     0.305      131     
buc:BU548 hypothetical protein                          K07447     135      168     0.258      132     
sot:102597279 putative pre-16S rRNA nuclease                       165      167     0.321      137     
vpa:VP2613 conserved hypothetical protein               K07447     141      166     0.281      139     
abo:ABO_0113 endonuclease, possible Holliday junction r K07447     133      165     0.333      132     
sly:101262873 uncharacterized protein isoform X1                   165      164     0.321      137     
plu:plu1182 unnamed protein product; Highly similar to  K07447     139      164     0.267      135     
gmx:100305864 ribonuclease H-like superfamily protein              170      161     0.281      135     
rso:RSc0676 putative holliday junction resolvase protei K07447     144      161     0.283      145     
dds:Ddes_0031 Holliday junction resolvase YqgF          K07447     140      159     0.298      131     
vch:VC_0466 conserved hypothetical protein              K07447     140      157     0.271      133     
brh:RBRH_01480 Hypothetical cytosolic protein           K07447     146      156     0.270      141     
amd:AMED_2714 putative holliday junction resolvase      K07447     133      156     0.323      133     
dra:DR_2509 conserved hypothetical protein              K07447     136      155     0.336      116     
pfr:PFREUD_11550 Holliday junction resolvase            K07447     181      154     0.327      156     
ctt:CtCNB1_3982 Holliday junction resolvase YqgF        K07447     170      153     0.310      155     
mtr:112421758 putative pre-16S rRNA nuclease                       171      151     0.284      134     
reh:H16_A2915 predicted endonuclease involved in recomb K07447     141      151     0.288      156     
reu:Reut_A0706 Holliday junction resolvase YqgF         K07447     141      151     0.272      136     
pma:Pro_0867 Predicted endonuclease                     K07447     153      149     0.288      139     
mca:MCA2335 conserved hypothetical protein TIGR00250    K07447     151      139     0.261      142     
zga:ZOBELLIA_2905 Holliday junction resolvase           K07447     159      138     0.268      142     
smo:SELMODRAFT_408862 hypothetical protein                         186      134     0.266      128     
vfi:VF_0433 predicted Holliday junction resolvase       K07447     141      132     0.271      133     
fps:FP1751 Putative Holliday junction resolvase         K07447     137      127     0.222      135     
pti:PHATRDRAFT_51570 hypothetical protein                          190      124     0.294      126     
mge:MG_505 conserved hypothetical protein               K07447     138      123     0.241      137     
tps:THAPSDRAFT_264879 uncharacterized protein                      423      120     0.297      91      
cre:CHLRE_09g409951v5 uncharacterized protein                      337      118     0.265      151     
wsu:WS1884 conserved hypothetical protein-Predicted end K07447     127      115     0.265      136     
ape:APE_1273.1 conserved hypothetical protein           K00763     390      115     0.316      114     
fvr:FVEG_15919 hypothetical protein                                608      111     0.301      83      
mpn:MPN_418 conserved hypothetical protein              K07447     140      105     0.264      140     
aor:AO090120000047 unnamed protein product; predicted p            264      102     0.264      148     
tma:TM1545 conserved hypothetical protein               K07447     218      100     0.254      130     
cel:CELE_F35C12.3 Phospholipase A1                                 264       99     0.263      118     
fca:100192304 T-cell receptor gamma chain C region C10.            239       98     0.266      94      
tcr:510029.60 synaptobrevin-type transport protein      K08517     262       98     0.250      116     
cje:Cj0635 Holliday junction resolvase-like protein     K07447     127       97     0.234      124     
ftu:FTT_0986 conserved hypothetical protein             K07447     136       88     0.215      130     
vg:9925890 Acinetobacter phage Ac42; hypothetical prote             84       82     0.314      70      

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