Number of references (2024/4/23)
total72,176
pathway6,633
brite443
module1,100
ko28,500
genome6,769
agenes3,050
glycan931
reaction2,070
enzyme16,115
network2,640
variant1,982
disease10,882

Data-oriented entry points

KEGG databases

Category Entry point Database Content Classification
Systems
information
KEGG PATHWAY PATHWAY KEGG pathway maps Pathway maps
KEGG BRITE BRITE BRITE hierarchies and tables Brite hierarchies
Brite tables
KEGG MODULE
KEGG RModule
MODULE KEGG modules and reaction modules Modules
Reaction modules
Genomic
information
KEGG ORTHOLOGY KO Functional orthologs KO
KEGG GENES
KEGG SeqData
GENES Genes and proteins
KEGG GENOME
KEGG Virus
GENOME Genomes of cellular organisms and viruses Organisms
Viruses
Chemical
information
KEGG COMPOUND COMPOUND Metabolites and other small molecules Compounds
KEGG GLYCAN GLYCAN Glycans
KEGG REACTION REACTION
RCLASS
Biochemical reactions
Reaction class
KEGG Enzyme ENZYME Enzyme nomenclature with sequence data EC sequence data
Health
information
KEGG NETWORK NETWORK
VARIANT
Disease-related network variations
Human gene variants
Network variation maps
KEGG DISEASE DISEASE Human diseases Human diseases (ICD)
Human diseases
Infectious diseases
KEGG DRUG DRUG
DGROUP
Drugs
Drug groups
Drugs (ATC)
Drugs (target)
Antiinfectives

Four types of database navigation bars

KEGG2 PATHWAY BRITE MODULE KO GENES  COMPOUND  NETWORK  DISEASE  DRUG
KEGG2 PATHWAY BRITE MODULE KO GENES    GENOME    Virus    SeqData    Enzyme
KEGG2 PATHWAY BRITE MODULE KO COMPOUND GLYCAN REACTION RModule
KEGG2 PATHWAY BRITE MODULE KO NETWORK DISEASE DRUG MEDICUS

MEDICUS extension

Category Entry point Database Content
Health
information
KEGG MEDICUS JAPIC Japanese drug labels
DailyMed FDA drug labels (links only)

GenomeNet extension

Category Entry point Database Content
Genomic
information
KEGG Metagenomes MGENES Genes in metagenomes
MGENOME Metagenomes of environmental samples

Organism-specific entry points

KEGG organisms - list of currently available organisms with organism codes and organism group names

Enter    (examples) hsa  mmu  sce  eco  bsu  syn

Associated tools and documents

Tool Content
DBGET Integrated database retrieval system
KEGG Mapper KEGG mapping tools
KEGG Web Apps Javascript-based web applications
KEGG Syntax Conserved gene order analysis
KEGG Annotation KO assignment and analysis
BlastKOALA
GhostKOALA
KofamKOALA
Automatic KO assignment server
BLAST
FASTA
Sequence similarity search
SIMCOMP
SUBCOMP
Chemical structure similarity search
Document
KEGG database entry format
KEGG Weblinks
Map coloring GUI
Map coloring URL
KEGG API manual
KEGG Markup Language (KGML)

See more tools at GenomeNet.


Last updated: April 1, 2024