SSDB Motif Search Result


Organism : Acetobacterium woodii
Gene : Awo_c26960
Definition : K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] | (GenBank) helicase, RecD/TraA family
Motif idFromToDefinitionE valueScore
pf:OB_YrrC173 6.4e-25-
pf:HHH_588133Helix-hairpin-helix domain 4.3e-08-
pf:HHH88100Helix-hairpin-helix motif 0.091-
pf:HHH_388132Helix-hairpin-helix motif 0.21-
pf:5_3_exonuc881415'-3' exonuclease, C-terminal SAM fold 0.68-
pf:HHH_289140Helix-hairpin-helix motif 0.00072-
pf:HHH_RecD290129 0.0034-
pf:RNA_pol_A_CTD109135Bacterial RNA polymerase, alpha chain C terminal domain 0.28-
pf:HHH_RecD2138228 8.1e-31-
pf:RsgA_GTPase317354 0.056-
pf:AAA_30319501AAA domain 1.6e-40-
pf:AAA_11319369AAA domain 0.00013-
pf:T2SSE319358Type II/IV secretion system protein 0.076-
pf:UvrD-helicase320357UvrD/REP helicase N-terminal domain 0.0047-
pf:PhoH321392PhoH-like protein 0.13-
pf:DEAD322468DEAD/DEAH box helicase 0.00074-
pf:AAA_19323458AAA domain 2.2e-44-
pf:nSTAND3324363 0.00018-
pf:PIF1325493PIF1-like helicase 4.9e-05-
pf:Mg_chelatase325367Magnesium chelatase, subunit ChlI 0.31-
pf:ATPase_2327399ATPase domain predominantly from Archaea 0.094-
pf:TsaE327358Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.32-
pf:NPHP3_N329361 0.12-
pf:MeaB330364 0.31-
pf:NB-ARC331358NB-ARC domain 0.36-
pf:AAA_22332449AAA domain 0.0031-
pf:AAA_23332353AAA domain 0.054-
pf:AAA_29332357P-loop containing region of AAA domain 0.042-
pf:AAA_16333358AAA ATPase domain 0.16-
pf:TrwB_AAD_bind333372Type IV secretion-system coupling protein DNA-binding domain 0.48-
pf:SLFN-g3_helicase335422 0.00041-
pf:SRP54335423SRP54-type protein, GTPase domain 0.061-
pf:PRK335367Phosphoribulokinase / Uridine kinase family 0.32-
pf:Viral_helicase1336456Viral (Superfamily 1) RNA helicase 0.012-
pf:AAA_28336356AAA domain 0.0034-
pf:NTPase_1336363NTPase 0.018-
pf:AAA_18336419AAA domain 0.24-
pf:NAT10_TcmA_helicase337436 0.00098-
pf:AAA337358ATPase family associated with various cellular activities (AAA) 0.41-
pf:AAA_11408456AAA domain 0.0051-
pf:SH3_13560636 2.9e-19-
pf:RRM_Thc1629677 0.025-
pf:UvrD_C_2654702UvrD-like helicase C-terminal domain 3.7e-18-
pf:Viral_helicase1654702Viral (Superfamily 1) RNA helicase 0.00081-
pf:AAA_12655705AAA domain 0.055-
pf:UvrD_C657702UvrD-like helicase C-terminal domain 0.00075-

awo:Awo_c26960 pf:OB_YrrC pf:HHH_5 pf:HHH pf:HHH_3 pf:5_3_exonuc pf:HHH_2 pf:HHH_RecD2 pf:RNA_pol_A_CTD pf:HHH_RecD2 pf:RsgA_GTPase pf:AAA_30 pf:AAA_11 pf:T2SSE pf:UvrD-helicase pf:PhoH pf:DEAD pf:AAA_19 pf:nSTAND3 pf:PIF1 pf:Mg_chelatase pf:ATPase_2 pf:TsaE pf:NPHP3_N pf:MeaB pf:NB-ARC pf:AAA_22 pf:AAA_23 pf:AAA_29 pf:AAA_16 pf:TrwB_AAD_bind pf:SLFN-g3_helicase pf:SRP54 pf:PRK pf:Viral_helicase1 pf:AAA_28 pf:NTPase_1 pf:AAA_18 pf:NAT10_TcmA_helicase pf:AAA pf:AAA_11 pf:SH3_13 pf:RRM_Thc1 pf:UvrD_C_2 pf:Viral_helicase1 pf:AAA_12 pf:UvrD_C

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