| Motif id | From | To | Definition | E value | Score |
| pf:RuvA_N | 1 | 58 | RuvA N terminal domain
| 1.4e-09 | - |
| pf:EutH | 52 | 136 | Ethanolamine utilisation protein, EutH
| 0.18 | - |
| pf:HHH_5 | 68 | 125 | Helix-hairpin-helix domain
| 1.9e-12 | - |
| pf:HHH | 68 | 82 | Helix-hairpin-helix motif
| 0.2 | - |
| pf:YNR034W-A-like | 91 | 126 | | 0.4 | - |
| pf:Med9 | 100 | 158 | RNA polymerase II transcription mediator complex subunit 9
| 0.19 | - |
| pf:RecR_HhH | 105 | 124 | | 0.68 | - |
| pf:WIYLD | 172 | 199 | Ubiquitin-binding WIYLD domain
| 0.18 | - |