| Motif id | From | To | Definition | E value | Score |
| pf:RuvA_N | 1 | 60 | RuvA N terminal domain
| 3.6e-12 | - |
| pf:Ribosomal_S13 | 61 | 109 | Ribosomal protein S13/S18
| 0.77 | - |
| pf:HHH_5 | 70 | 128 | Helix-hairpin-helix domain
| 5.2e-11 | - |
| pf:HHH_4 | 73 | 125 | Helix-hairpin-helix containing domain
| 0.37 | - |
| pf:HHH | 101 | 123 | Helix-hairpin-helix motif
| 0.33 | - |
| pf:RuvA_C | 148 | 192 | RuvA, C-terminal domain
| 1.8e-12 | - |
| pf:UBA | 149 | 171 | UBA/TS-N domain
| 0.013 | - |