| Motif id | From | To | Definition | E value | Score |
| pf:PAC4 | 6 | 64 | Proteasome assembly chaperone 4
| 0.044 | - |
| pf:CheB_methylest | 11 | 186 | CheB methylesterase
| 1e-56 | - |
| pf:CheR_N | 210 | 270 | CheR methyltransferase, all-alpha domain
| 1.2e-15 | - |
| pf:CheR | 274 | 465 | CheR methyltransferase, SAM binding domain
| 9.1e-54 | - |
| pf:COG5_N | 639 | 734 | | 0.38 | - |
| pf:PAS_10 | 725 | 832 | PAS domain
| 1.1e-27 | - |
| pf:PAS | 725 | 832 | PAS fold
| 0.98 | - |
| pf:PAS_4 | 857 | 963 | PAS fold
| 0.34 | - |
| pf:PAS_9 | 863 | 961 | PAS domain
| 5.3e-09 | - |
| pf:PAS | 866 | 959 | PAS fold
| 3.1e-06 | - |
| pf:CCDC89 | 959 | 1029 | | 0.6 | - |
| pf:HisKA | 983 | 1049 | His Kinase A (phospho-acceptor) domain
| 1.8e-11 | - |
| pf:HATPase_c | 1092 | 1199 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
| 7.1e-25 | - |
| pf:HATPase_c_3 | 1118 | 1163 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
| 0.13 | - |