| Motif id | From | To | Definition | E value | Score |
| pf:Dala_Dala_lig_N | 8 | 131 | D-ala D-ala ligase N-terminus
| 1.1e-31 | - |
| pf:GARS_A | 141 | 245 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
| 0.0041 | - |
| pf:Dala_Dala_lig_C | 149 | 350 | D-ala D-ala ligase C-terminus
| 7.7e-61 | - |
| pf:ATP-grasp | 149 | 319 | ATP-grasp domain
| 0.00016 | - |
| pf:CPSase_L_D2 | 273 | 320 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 0.73 | - |
| pf:RimK | 279 | 332 | RimK-like ATP-grasp domain
| 0.12 | - |