| Motif id | From | To | Definition | E value | Score |
| pf:CPSase_sm_chain | 24 | 159 | Carbamoyl-phosphate synthase small chain, CPSase domain
| 1.9e-45 | - |
| pf:GATase | 238 | 412 | Glutamine amidotransferase class-I
| 1.6e-50 | - |
| pf:DJ-1_PfpI | 266 | 320 | DJ-1/PfpI family
| 0.23 | - |
| pf:Peptidase_C26 | 294 | 322 | Peptidase C26
| 0.048 | - |
| pf:CPSase_L_D2 | 565 | 768 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 7.6e-85 | - |
| pf:ATP-grasp | 579 | 715 | ATP-grasp domain
| 0.0003 | - |
| pf:Dala_Dala_lig_C | 594 | 736 | D-ala D-ala ligase C-terminus
| 5.2e-06 | - |
| pf:ATP-grasp_3 | 599 | 739 | ATP-grasp domain
| 0.61 | - |
| pf:ATPgrasp_Ter | 698 | 765 | ATP-grasp in the biosynthetic pathway with Ter operon
| 0.085 | - |
| pf:CPSase_L_D3 | 855 | 935 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain
| 1.9e-26 | - |
| pf:ATP-grasp_3 | 1101 | 1275 | ATP-grasp domain
| 0.082 | - |
| pf:CPSase_L_D2 | 1104 | 1296 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 1.1e-29 | - |
| pf:ATP-grasp | 1113 | 1274 | ATP-grasp domain
| 1.4e-07 | - |
| pf:Dala_Dala_lig_C | 1115 | 1272 | D-ala D-ala ligase C-terminus
| 3.7e-10 | - |
| pf:ATPgrasp_Ter | 1179 | 1301 | ATP-grasp in the biosynthetic pathway with Ter operon
| 1.1e-05 | - |
| pf:MGS | 1384 | 1481 | MGS-like domain
| 1.4e-19 | - |
| pf:OTCace_N | 1918 | 2058 | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
| 3.5e-48 | - |
| pf:OTCace | 2064 | 2214 | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
| 2.7e-28 | - |