SSDB Motif Search Result


Organism : Chlorobium limicola
Gene : Clim_0947
Definition : K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] | (GenBank) helicase, RecD/TraA family
Motif idFromToDefinitionE valueScore
pf:OB_YrrC1990 2.8e-23-
pf:DUF62875686 0.56-
pf:HHH_5107156Helix-hairpin-helix domain 4.2e-08-
pf:HHH_2108146Helix-hairpin-helix motif 0.02-
pf:HHH_RecD2109153 0.0061-
pf:HHH_RecD2157246 3.7e-31-
pf:T2SSE329384Type II/IV secretion system protein 0.0074-
pf:AAA_30337517AAA domain 4.5e-43-
pf:AAA_11338395AAA domain 4.2e-07-
pf:PIF1338497PIF1-like helicase 0.0002-
pf:UvrD-helicase339398UvrD/REP helicase N-terminal domain 0.00042-
pf:PhoH339402PhoH-like protein 0.024-
pf:DEAD340400DEAD/DEAH box helicase 0.0033-
pf:ABC_ATPase340376Predicted ATPase of the ABC class 0.22-
pf:RsgA_GTPase341394 7e-05-
pf:AAA_19342473AAA domain 1.4e-45-
pf:nSTAND3342383 0.00051-
pf:P-loop_TraG346398 0.13-
pf:AAA_7348383P-loop containing dynein motor region D3 0.32-
pf:AAA_23350373AAA domain 0.12-
pf:AAA_29352376P-loop containing region of AAA domain 0.0028-
pf:TrwB_AAD_bind352392Type IV secretion-system coupling protein DNA-binding domain 0.0031-
pf:ABC_tran352385ABC transporter 0.013-
pf:AAA_22352389AAA domain 0.037-
pf:AAA_14352380AAA domain 0.44-
pf:NPHP3_N353412 0.15-
pf:AAA_16354379AAA ATPase domain 0.012-
pf:cobW354380CobW/HypB/UreG, nucleotide-binding domain 0.079-
pf:SLFN-g3_helicase354437 0.25-
pf:Viral_helicase1355471Viral (Superfamily 1) RNA helicase 0.019-
pf:SRP54355387SRP54-type protein, GTPase domain 0.87-
pf:NACHT355380NACHT domain 0.39-
pf:NAT10_TcmA_helicase356453 0.0015-
pf:NTPase_1356382NTPase 0.0021-
pf:AAA_28356372AAA domain 0.019-
pf:MMR_HSR135638250S ribosome-binding GTPase 0.096-
pf:AAA_5356385AAA domain (dynein-related subfamily) 0.28-
pf:MeaB356385 0.16-
pf:AAA357379ATPase family associated with various cellular activities (AAA) 0.24-
pf:ATP_bind_1357381Conserved hypothetical ATP binding protein 0.38-
pf:AAA_11429471AAA domain 1-
pf:Pirin515574Pirin 0.28-
pf:SH3_13578640 5.3e-23-
pf:Viral_helicase1651705Viral (Superfamily 1) RNA helicase 0.2-
pf:UvrD_C_2657705UvrD-like helicase C-terminal domain 6.2e-16-

cli:Clim_0947 pf:OB_YrrC pf:DUF6287 pf:HHH_5 pf:HHH_2 pf:HHH_RecD2 pf:HHH_RecD2 pf:T2SSE pf:AAA_30 pf:AAA_11 pf:PIF1 pf:UvrD-helicase pf:PhoH pf:DEAD pf:ABC_ATPase pf:RsgA_GTPase pf:AAA_19 pf:nSTAND3 pf:P-loop_TraG pf:AAA_7 pf:AAA_23 pf:AAA_29 pf:TrwB_AAD_bind pf:ABC_tran pf:AAA_22 pf:AAA_14 pf:NPHP3_N pf:AAA_16 pf:cobW pf:SLFN-g3_helicase pf:Viral_helicase1 pf:SRP54 pf:NACHT pf:NAT10_TcmA_helicase pf:NTPase_1 pf:AAA_28 pf:MMR_HSR1 pf:AAA_5 pf:MeaB pf:AAA pf:ATP_bind_1 pf:AAA_11 pf:Pirin pf:SH3_13 pf:Viral_helicase1 pf:UvrD_C_2

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