SSDB Motif Search Result
Organism :
Caldicellulosiruptor saccharolyticus
Gene :
Csac_1228
Definition :
no KO assigned | (GenBank) Alanine racemase
Motif id
From
To
Definition
E value
Score
pf:HTH_Tnp_ISL3
1
22
Helix-turn-helix domain of transposase family ISL3
0.012
-
pf:HI_1423
1
27
0.7
-
pf:HTH_31
2
39
Helix-turn-helix domain
8e-05
-
pf:HTH_IclR
2
23
IclR helix-turn-helix domain
0.013
-
pf:TetR_N
2
20
Bacterial regulatory proteins, tetR family
0.028
-
pf:HTH_10
2
23
HTH DNA binding domain
0.16
-
pf:HTH_23
2
23
Homeodomain-like domain
0.094
-
pf:DUF8494
2
33
0.1
-
pf:MarR_2
2
22
MarR family
0.12
-
pf:LacI
3
48
Bacterial regulatory proteins, lacI family
8.4e-21
-
pf:HTH_3
3
39
Helix-turn-helix
2.7e-06
-
pf:HTH_Crp_2
3
23
Crp-like helix-turn-helix domain
0.095
-
pf:HTH_7
3
23
Helix-turn-helix domain of resolvase
0.007
-
pf:HTH_24
3
21
Winged helix-turn-helix DNA-binding
0.094
-
pf:HTH_AraC
3
22
Bacterial regulatory helix-turn-helix proteins, AraC family
0.026
-
pf:HTH_26
3
32
Cro/C1-type HTH DNA-binding domain
0.12
-
pf:HTH_28
3
22
Helix-turn-helix domain
0.15
-
pf:MarR
3
22
MarR family
0.21
-
pf:HTH_5
3
20
Bacterial regulatory protein, arsR family
0.14
-
pf:MerR
3
18
MerR family regulatory protein
0.44
-
pf:Sigma54_DBD
3
29
Sigma-54, DNA binding domain
0.29
-
pf:HTH_AsnC-type
3
20
AsnC-type helix-turn-helix domain
0.33
-
pf:HTH_38
4
22
Helix-turn-helix domain
0.0012
-
pf:Xre-like-HTH
4
35
0.09
-
pf:CENP-B_N
5
28
CENP-B N-terminal DNA-binding domain
0.09
-
pf:YdaS_toxin
6
41
0.17
-
pf:Peripla_BP_1
74
312
Periplasmic binding proteins and sugar binding domain of LacI family
6.5e-23
-
pf:Peripla_BP_4
76
312
Periplasmic binding protein domain
6.2e-09
-
pf:TrmB_EBD_N
79
133
0.21
-
pf:Peripla_BP_3
174
334
Periplasmic binding protein-like domain
8.1e-30
-
[
GENES
|
KEGG2
|
KEGG
|
GenomeNet
]