| Motif id | From | To | Definition | E value | Score |
| pf:HTH_Tnp_ISL3 | 1 | 22 | Helix-turn-helix domain of transposase family ISL3
| 0.0049 | - |
| pf:HTH_IclR | 2 | 23 | IclR helix-turn-helix domain
| 0.013 | - |
| pf:TetR_N | 2 | 20 | Bacterial regulatory proteins, tetR family
| 0.023 | - |
| pf:HTH_10 | 2 | 23 | HTH DNA binding domain
| 0.12 | - |
| pf:MarR_2 | 2 | 22 | MarR family
| 0.078 | - |
| pf:HTH_23 | 2 | 22 | Homeodomain-like domain
| 0.081 | - |
| pf:LacI | 3 | 48 | Bacterial regulatory proteins, lacI family
| 6.5e-21 | - |
| pf:HTH_3 | 3 | 39 | Helix-turn-helix
| 2.1e-06 | - |
| pf:HTH_31 | 3 | 39 | Helix-turn-helix domain
| 8e-05 | - |
| pf:HTH_Crp_2 | 3 | 23 | Crp-like helix-turn-helix domain
| 0.062 | - |
| pf:HTH_7 | 3 | 23 | Helix-turn-helix domain of resolvase
| 0.0056 | - |
| pf:HTH_24 | 3 | 21 | Winged helix-turn-helix DNA-binding
| 0.085 | - |
| pf:HTH_AraC | 3 | 22 | Bacterial regulatory helix-turn-helix proteins, AraC family
| 0.021 | - |
| pf:HTH_26 | 3 | 32 | Cro/C1-type HTH DNA-binding domain
| 0.098 | - |
| pf:HTH_28 | 3 | 22 | Helix-turn-helix domain
| 0.1 | - |
| pf:MarR | 3 | 22 | MarR family
| 0.17 | - |
| pf:HTH_5 | 3 | 20 | Bacterial regulatory protein, arsR family
| 0.11 | - |
| pf:HTH_AsnC-type | 3 | 20 | AsnC-type helix-turn-helix domain
| 0.24 | - |
| pf:MerR | 3 | 18 | MerR family regulatory protein
| 0.34 | - |
| pf:Sigma54_DBD | 3 | 29 | Sigma-54, DNA binding domain
| 0.24 | - |
| pf:HTH_38 | 4 | 22 | Helix-turn-helix domain
| 0.00097 | - |
| pf:Xre-like-HTH | 4 | 36 | | 0.092 | - |
| pf:CENP-B_N | 5 | 28 | CENP-B N-terminal DNA-binding domain
| 0.072 | - |
| pf:YdaS_toxin | 6 | 39 | | 0.3 | - |
| pf:Peripla_BP_1 | 74 | 312 | Periplasmic binding proteins and sugar binding domain of LacI family
| 5.2e-23 | - |
| pf:Peripla_BP_4 | 76 | 312 | Periplasmic binding protein domain
| 5.4e-09 | - |
| pf:Peripla_BP_3 | 174 | 334 | Periplasmic binding protein-like domain
| 6.7e-30 | - |