| Motif id | From | To | Definition | E value | Score |
| pf:HTH_Tnp_ISL3 | 1 | 22 | Helix-turn-helix domain of transposase family ISL3
| 0.0015 | - |
| pf:HTH_26 | 1 | 29 | Cro/C1-type HTH DNA-binding domain
| 0.23 | - |
| pf:HTH_Crp_2 | 2 | 23 | Crp-like helix-turn-helix domain
| 0.08 | - |
| pf:MarR_2 | 2 | 22 | MarR family
| 0.006 | - |
| pf:TetR_N | 2 | 20 | Bacterial regulatory proteins, tetR family
| 0.016 | - |
| pf:HTH_10 | 2 | 23 | HTH DNA binding domain
| 0.087 | - |
| pf:LacI | 3 | 48 | Bacterial regulatory proteins, lacI family
| 8.9e-21 | - |
| pf:HTH_3 | 3 | 39 | Helix-turn-helix
| 2.7e-06 | - |
| pf:HTH_38 | 3 | 22 | Helix-turn-helix domain
| 0.00065 | - |
| pf:HTH_31 | 3 | 39 | Helix-turn-helix domain
| 0.0011 | - |
| pf:HTH_23 | 3 | 23 | Homeodomain-like domain
| 0.0034 | - |
| pf:HTH_7 | 3 | 23 | Helix-turn-helix domain of resolvase
| 0.0061 | - |
| pf:HTH_24 | 3 | 21 | Winged helix-turn-helix DNA-binding
| 0.04 | - |
| pf:HTH_AraC | 3 | 22 | Bacterial regulatory helix-turn-helix proteins, AraC family
| 0.017 | - |
| pf:HTH_19 | 3 | 40 | Helix-turn-helix domain
| 0.02 | - |
| pf:HTH_IclR | 3 | 23 | IclR helix-turn-helix domain
| 0.014 | - |
| pf:HTH_28 | 3 | 22 | Helix-turn-helix domain
| 0.084 | - |
| pf:HTH_5 | 3 | 20 | Bacterial regulatory protein, arsR family
| 0.1 | - |
| pf:Sigma54_DBD | 3 | 29 | Sigma-54, DNA binding domain
| 0.12 | - |
| pf:MarR | 3 | 22 | MarR family
| 0.24 | - |
| pf:MerR | 3 | 18 | MerR family regulatory protein
| 0.24 | - |
| pf:HTH_AsnC-type | 3 | 20 | AsnC-type helix-turn-helix domain
| 0.28 | - |
| pf:YdaS_antitoxin | 5 | 40 | Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
| 0.0064 | - |
| pf:CENP-B_N | 5 | 28 | CENP-B N-terminal DNA-binding domain
| 0.046 | - |
| pf:Peripla_BP_1 | 74 | 312 | Periplasmic binding proteins and sugar binding domain of LacI family
| 6.1e-23 | - |
| pf:Peripla_BP_4 | 76 | 312 | Periplasmic binding protein domain
| 9.7e-10 | - |
| pf:Peripla_BP_3 | 173 | 334 | Periplasmic binding protein-like domain
| 9.3e-32 | - |