| Motif id | From | To | Definition | E value | Score |
| pf:Dala_Dala_lig_N | 5 | 130 | D-ala D-ala ligase N-terminus
| 2.4e-37 | - |
| pf:CPSase_L_D2 | 140 | 318 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 3.4e-06 | - |
| pf:GARS_A | 140 | 235 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
| 0.1 | - |
| pf:Dala_Dala_lig_C | 147 | 348 | D-ala D-ala ligase C-terminus
| 5.1e-81 | - |
| pf:ATP-grasp | 147 | 317 | ATP-grasp domain
| 7.6e-15 | - |
| pf:ATP-grasp_4 | 180 | 318 | ATP-grasp domain
| 0.00043 | - |
| pf:RimK | 278 | 330 | RimK-like ATP-grasp domain
| 0.29 | - |