| Motif id | From | To | Definition | E value | Score |
| pf:CheB_methylest | 54 | 230 | CheB methylesterase
| 6.4e-57 | - |
| pf:CheR_N | 252 | 300 | CheR methyltransferase, all-alpha domain
| 2.6e-14 | - |
| pf:Ribonuc_L-PSP | 313 | 351 | Endoribonuclease L-PSP
| 0.58 | - |
| pf:CheR | 317 | 503 | CheR methyltransferase, SAM binding domain
| 2.1e-45 | - |
| pf:HMMR_N | 682 | 769 | Hyaluronan mediated motility receptor N-terminal
| 0.0099 | - |
| pf:DUF1664 | 682 | 750 | Protein of unknown function (DUF1664)
| 0.11 | - |
| pf:RTP1_C2 | 691 | 704 | Required for nuclear transport of RNA pol II C-terminus 2
| 0.36 | - |
| pf:DUF5798 | 693 | 752 | | 0.95 | - |
| pf:Fusion_gly | 694 | 742 | Fusion glycoprotein F0
| 0.14 | - |
| pf:DASH_Duo1 | 702 | 742 | DASH complex subunit Duo1
| 0.2 | - |
| pf:PAS_3 | 827 | 885 | PAS fold
| 0.00013 | - |
| pf:HisKA | 921 | 987 | His Kinase A (phospho-acceptor) domain
| 4e-20 | - |
| pf:HATPase_c | 1035 | 1148 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
| 1.6e-26 | - |