| Motif id | From | To | Definition | E value | Score |
| pf:RuvA_N | 1 | 61 | RuvA N terminal domain
| 3.9e-17 | - |
| pf:HHH_2 | 68 | 90 | Helix-hairpin-helix motif
| 0.28 | - |
| pf:HHH_5 | 71 | 129 | Helix-hairpin-helix domain
| 1.4e-16 | - |
| pf:HHH | 71 | 90 | Helix-hairpin-helix motif
| 0.0029 | - |
| pf:Tic110 | 102 | 176 | Chloroplast envelope transporter
| 0.015 | - |
| pf:RecR_HhH | 107 | 127 | | 0.00024 | - |
| pf:HHH | 112 | 124 | Helix-hairpin-helix motif
| 0.081 | - |
| pf:RuvA_C | 151 | 196 | RuvA, C-terminal domain
| 5.1e-08 | - |
| pf:PG_binding_2 | 151 | 179 | Putative peptidoglycan binding domain
| 0.28 | - |