| Motif id | From | To | Definition | E value | Score |
| pf:CPSase_sm_chain | 98 | 232 | Carbamoyl-phosphate synthase small chain, CPSase domain
| 2e-46 | - |
| pf:GATase | 275 | 450 | Glutamine amidotransferase class-I
| 4e-51 | - |
| pf:Peptidase_C26 | 336 | 398 | Peptidase C26
| 0.0015 | - |
| pf:CPSase_L_D1 | 488 | 604 | | 9.4e-45 | - |
| pf:CPSase_L_D2 | 608 | 810 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 2.1e-82 | - |
| pf:ATP-grasp | 616 | 766 | ATP-grasp domain
| 1.7e-05 | - |
| pf:Dala_Dala_lig_C | 633 | 779 | D-ala D-ala ligase C-terminus
| 1.5e-10 | - |
| pf:ATP-grasp_3 | 641 | 782 | ATP-grasp domain
| 0.09 | - |
| pf:ATPgrasp_Ter | 744 | 807 | ATP-grasp in the biosynthetic pathway with Ter operon
| 0.046 | - |
| pf:CPSase_L_D3 | 859 | 991 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain
| 2.6e-43 | - |
| pf:CPSase_L_D1 | 1029 | 1140 | | 2.3e-44 | - |
| pf:ATP-grasp_3 | 1143 | 1316 | ATP-grasp domain
| 0.22 | - |
| pf:GARS_A | 1150 | 1316 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
| 0.015 | - |
| pf:ATP-grasp | 1151 | 1316 | ATP-grasp domain
| 3.2e-10 | - |
| pf:CPSase_L_D2 | 1163 | 1344 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 3.1e-25 | - |
| pf:Dala_Dala_lig_C | 1164 | 1314 | D-ala D-ala ligase C-terminus
| 7.8e-06 | - |
| pf:GSH-S_ATP | 1182 | 1296 | Prokaryotic glutathione synthetase, ATP-grasp domain
| 0.22 | - |
| pf:ATPgrasp_Ter | 1228 | 1344 | ATP-grasp in the biosynthetic pathway with Ter operon
| 0.0006 | - |
| pf:MGS | 1424 | 1527 | MGS-like domain
| 1.7e-17 | - |
| pf:DHOase | 1564 | 1697 | Dihydro-orotase-like
| 1.3e-09 | - |
| pf:Amidohydro_1 | 1564 | 1614 | Amidohydrolase family
| 2e-07 | - |
| pf:OTCace_N | 2048 | 2189 | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
| 4.5e-43 | - |
| pf:OTCace | 2196 | 2344 | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
| 3.4e-32 | - |