| Motif id | From | To | Definition | E value | Score |
| pf:RuvA_N | 1 | 61 | RuvA N terminal domain
| 2.3e-14 | - |
| pf:HHH_2 | 63 | 101 | Helix-hairpin-helix motif
| 0.063 | - |
| pf:HHH_5 | 71 | 127 | Helix-hairpin-helix domain
| 2e-13 | - |
| pf:HHH_2 | 101 | 124 | Helix-hairpin-helix motif
| 0.62 | - |
| pf:Cdd1 | 104 | 124 | Pathogenicity locus
| 0.13 | - |
| pf:HHH_8 | 105 | 123 | Helix-hairpin-helix domain
| 0.024 | - |
| pf:HHH | 106 | 124 | Helix-hairpin-helix motif
| 0.0028 | - |
| pf:HHH_3 | 106 | 124 | Helix-hairpin-helix motif
| 0.092 | - |
| pf:IMS_HHH | 109 | 122 | IMS family HHH motif
| 0.52 | - |
| pf:RuvA_C | 139 | 181 | RuvA, C-terminal domain
| 6.3e-13 | - |
| pf:UBA_DHX29 | 141 | 163 | | 0.14 | - |