| Motif id | From | To | Definition | E value | Score |
| pf:APC_N_CC | 4 | 55 | Coiled-coil N-terminus of APC, dimerisation domain
| 2.5e-29 | - |
| pf:Suppressor_APC | 134 | 202 | Adenomatous polyposis coli tumour suppressor protein
| 6.1e-14 | - |
| pf:Arm | 347 | 368 | Armadillo/beta-catenin-like repeat
| 0.38 | - |
| pf:APC_rep | 393 | 466 | | 4.8e-40 | - |
| pf:ARM_ARMC5 | 453 | 624 | | 0.0033 | - |
| pf:ZER1-like_2nd | 521 | 693 | | 0.001 | - |
| pf:Arm | 523 | 552 | Armadillo/beta-catenin-like repeat
| 0.00038 | - |
| pf:Arm | 560 | 597 | Armadillo/beta-catenin-like repeat
| 0.022 | - |
| pf:Sec7-like_HUS | 620 | 689 | | 0.035 | - |
| pf:ARM_ARMC5 | 648 | 732 | | 0.044 | - |
| pf:Arm | 649 | 689 | Armadillo/beta-catenin-like repeat
| 1.4e-07 | - |
| pf:Arm | 691 | 730 | Armadillo/beta-catenin-like repeat
| 0.00056 | - |
| pf:Arm_APC_u3 | 732 | 1019 | Armadillo-associated region on APC
| 3.4e-168 | - |
| pf:APC_15aa | 1020 | 1034 | APC 15 residue motif
| 0.00014 | - |
| pf:APC_u5 | 1036 | 1135 | Unstructured region on APC between 1st and 2nd catenin-bdg motifs
| 5.5e-53 | - |
| pf:APC_15aa | 1136 | 1150 | APC 15 residue motif
| 0.0014 | - |
| pf:APC_15aa | 1155 | 1169 | APC 15 residue motif
| 0.00019 | - |
| pf:APC_15aa | 1172 | 1186 | APC 15 residue motif
| 2.1e-05 | - |
| pf:APC_r | 1260 | 1280 | APC repeat
| 2.7e-10 | - |
| pf:APC_u9 | 1282 | 1368 | Unstructured region on APC between 1st two creatine-rich regions
| 8.1e-35 | - |
| pf:APC_r | 1372 | 1393 | APC repeat
| 1e-06 | - |
| pf:APC_r | 1486 | 1509 | APC repeat
| 6e-05 | - |
| pf:SAMP | 1567 | 1588 | SAMP Motif
| 7.1e-09 | - |
| pf:APC_r | 1637 | 1660 | APC repeat
| 1.5e-10 | - |
| pf:APC_u13 | 1662 | 1715 | Unstructured region on APC between APC_crr and SAMP
| 8.3e-26 | - |
| pf:SAMP | 1717 | 1737 | SAMP Motif
| 4.9e-08 | - |
| pf:APC_u14 | 1746 | 1839 | Unstructured region on APC between SAMP and APC_crr
| 3.1e-41 | - |
| pf:APC_r | 1841 | 1865 | APC repeat
| 4e-08 | - |
| pf:APC_u15 | 1867 | 1947 | Unstructured region on APC between APC_crr regions 5 and 6
| 5.5e-38 | - |
| pf:APC_r | 1950 | 1972 | APC repeat
| 1.5e-07 | - |
| pf:APC_r | 2008 | 2030 | APC repeat
| 2.6e-09 | - |
| pf:SAMP | 2031 | 2051 | SAMP Motif
| 5e-10 | - |
| pf:APC_basic | 2224 | 2575 | APC basic domain
| 1.5e-122 | - |
| pf:EB1_binding | 2670 | 2843 | EB-1 Binding Domain
| 1.8e-95 | - |