| Motif id | From | To | Definition | E value | Score |
| pf:Dala_Dala_lig_N | 6 | 118 | D-ala D-ala ligase N-terminus
| 2.3e-30 | - |
| pf:GARS_A | 129 | 232 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
| 0.00047 | - |
| pf:Dala_Dala_lig_C | 136 | 343 | D-ala D-ala ligase C-terminus
| 2.5e-67 | - |
| pf:ATP-grasp | 138 | 311 | ATP-grasp domain
| 1.6e-07 | - |
| pf:CPSase_L_D2 | 161 | 313 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 0.0081 | - |
| pf:ATP-grasp_4 | 176 | 231 | ATP-grasp domain
| 0.00088 | - |
| pf:TTL | 248 | 319 | Tubulin-tyrosine ligase family
| 0.033 | - |