SSDB Motif Search Result


Organism : Lacticaseibacillus paracasei ATCC 334
Gene : LSEI_1295
Definition : K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] | (GenBank) ATP-dependent DNA helicase, RecD/TraA family
Motif idFromToDefinitionE valueScore
pf:OB_YrrC684 4.1e-23-
pf:IMS_HHH97115IMS family HHH motif 0.56-
pf:RecR_HhH98114 0.24-
pf:HHH_599124Helix-hairpin-helix domain 0.034-
pf:HHH100112Helix-hairpin-helix motif 0.3-
pf:5_3_exonuc1001275'-3' exonuclease, C-terminal SAM fold 0.86-
pf:HHH_RecD2149239 8.3e-28-
pf:H2TH_5188219 0.88-
pf:AAA_30335526AAA domain 6.7e-39-
pf:AAA_11335405AAA domain 0.00014-
pf:UvrD-helicase338409UvrD/REP helicase N-terminal domain 0.13-
pf:AAA_19339481AAA domain 6.7e-40-
pf:nSTAND3347375 0.44-
pf:AAA_16348401AAA ATPase domain 0.045-
pf:AAA_29348370P-loop containing region of AAA domain 0.16-
pf:NPHP3_N348372 0.42-
pf:AAA_22351473AAA domain 0.00042-
pf:AAA_18353392AAA domain 0.27-
pf:AAA353373ATPase family associated with various cellular activities (AAA) 0.45-
pf:AAA_28353368AAA domain 0.33-
pf:Viral_helicase1354478Viral (Superfamily 1) RNA helicase 0.73-
pf:HTH_IclR403422IclR helix-turn-helix domain 0.17-
pf:AAA_11441479AAA domain 0.16-
pf:SH3_13581652 2e-19-
pf:UvrD_C665716UvrD-like helicase C-terminal domain 0.012-
pf:Viral_helicase1666716Viral (Superfamily 1) RNA helicase 0.00067-
pf:UvrD_C_2669717UvrD-like helicase C-terminal domain 5.1e-18-

lca:LSEI_1295 pf:OB_YrrC pf:IMS_HHH pf:RecR_HhH pf:HHH_5 pf:HHH pf:5_3_exonuc pf:HHH_RecD2 pf:H2TH_5 pf:AAA_30 pf:AAA_11 pf:UvrD-helicase pf:AAA_19 pf:nSTAND3 pf:AAA_16 pf:AAA_29 pf:NPHP3_N pf:AAA_22 pf:AAA_18 pf:AAA pf:AAA_28 pf:Viral_helicase1 pf:HTH_IclR pf:AAA_11 pf:SH3_13 pf:UvrD_C pf:Viral_helicase1 pf:UvrD_C_2

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