| Motif id | From | To | Definition | E value | Score |
| pf:bHLH_NCOA | 1 | 77 | | 1.2e-42 | - |
| pf:HLH | 29 | 80 | Helix-loop-helix DNA-binding domain
| 0.0011 | - |
| pf:PAS_12 | 69 | 154 | | 0.31 | - |
| pf:PAS | 115 | 172 | PAS fold
| 4e-07 | - |
| pf:PAS_4 | 117 | 171 | PAS fold
| 0.48 | - |
| pf:PAS_9 | 121 | 174 | PAS domain
| 0.00094 | - |
| pf:PAS_11 | 125 | 170 | PAS domain
| 0.012 | - |
| pf:PAS_3 | 133 | 190 | PAS fold
| 0.00031 | - |
| pf:PAS_11 | 260 | 369 | PAS domain
| 7.4e-34 | - |
| pf:NCOA_u2 | 468 | 590 | Unstructured region on nuclear receptor coactivator protein
| 5.7e-22 | - |
| pf:SRC-1 | 631 | 709 | Steroid receptor coactivator
| 1.6e-23 | - |
| pf:DUF4927 | 739 | 823 | Domain of unknown function (DUF4927)
| 1.7e-05 | - |
| pf:Nuc_rec_co-act | 925 | 974 | Nuclear receptor coactivator
| 1.2e-20 | - |
| pf:DUF1518 | 1150 | 1206 | Domain of unknown function (DUF1518)
| 1.2e-16 | - |
| pf:DUF1518 | 1213 | 1269 | Domain of unknown function (DUF1518)
| 5.5e-16 | - |