| Motif id | From | To | Definition | E value | Score |
| pf:Response_reg | 4 | 113 | Response regulator receiver domain
| 2.3e-28 | - |
| pf:AmiR_N | 4 | 113 | | 0.72 | - |
| pf:VpsR | 19 | 114 | | 0.92 | - |
| pf:DUF815 | 138 | 199 | Protein of unknown function (DUF815)
| 0.061 | - |
| pf:TIP49 | 139 | 203 | TIP49 C-terminus
| 0.17 | - |
| pf:T2SSE | 144 | 199 | Type II/IV secretion system protein
| 0.16 | - |
| pf:Sigma54_activat | 146 | 311 | Sigma-54 interaction domain
| 1.5e-67 | - |
| pf:Sigma54_activ_2 | 146 | 315 | Sigma-54 interaction domain
| 8.6e-20 | - |
| pf:AAA_16 | 147 | 262 | AAA ATPase domain
| 6.9e-05 | - |
| pf:AAA_7 | 153 | 195 | P-loop containing dynein motor region D3
| 0.04 | - |
| pf:AAA_30 | 162 | 266 | AAA domain
| 0.067 | - |
| pf:AAA_19 | 165 | 266 | AAA domain
| 0.14 | - |
| pf:AAA_2 | 166 | 291 | AAA domain (Cdc48 subfamily)
| 0.034 | - |
| pf:AAA_22 | 167 | 205 | AAA domain
| 0.08 | - |
| pf:AAA_5 | 168 | 288 | AAA domain (dynein-related subfamily)
| 7.2e-08 | - |
| pf:AAA | 168 | 286 | ATPase family associated with various cellular activities (AAA)
| 1.1e-05 | - |
| pf:AAA_3 | 168 | 285 | ATPase family associated with various cellular activities (AAA)
| 0.08 | - |
| pf:Crystall_4 | 225 | 277 | | 0.57 | - |
| pf:Mg_chelatase | 226 | 286 | Magnesium chelatase, subunit ChlI
| 0.3 | - |
| pf:AAA_lid_14 | 316 | 395 | | 1.4e-21 | - |
| pf:HTH_23 | 404 | 443 | Homeodomain-like domain
| 0.13 | - |
| pf:HTH_8 | 406 | 443 | Bacterial regulatory protein, Fis family
| 1.4e-13 | - |
| pf:HTH_28 | 407 | 444 | Helix-turn-helix domain
| 0.024 | - |
| pf:HTH_30 | 412 | 442 | PucR C-terminal helix-turn-helix domain
| 0.083 | - |