| Motif id | From | To | Definition | E value | Score |
| pf:RuvA_N | 1 | 62 | RuvA N terminal domain
| 2.8e-17 | - |
| pf:HHH_5 | 72 | 130 | Helix-hairpin-helix domain
| 3.2e-14 | - |
| pf:HHH_2 | 99 | 125 | Helix-hairpin-helix motif
| 0.77 | - |
| pf:RecR_HhH | 109 | 128 | | 0.021 | - |
| pf:HHH | 110 | 124 | Helix-hairpin-helix motif
| 0.036 | - |
| pf:IMS_HHH | 110 | 124 | IMS family HHH motif
| 0.061 | - |
| pf:DNA_pol_lambd_f | 110 | 125 | Fingers domain of DNA polymerase lambda
| 0.091 | - |
| pf:RuvA_C | 154 | 198 | RuvA, C-terminal domain
| 1.7e-09 | - |