SSDB Motif Search Result


Organism : Nocardiopsis alba
Gene : B005_1018
Definition : K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] | (GenBank) viral (Super1) RNA helicase family protein
Motif idFromToDefinitionE valueScore
pf:OB_YrrC274 5.2e-26-
pf:HHH_589138Helix-hairpin-helix domain 1.1e-08-
pf:HHH89101Helix-hairpin-helix motif 0.24-
pf:HHH_RecD291135 0.00014-
pf:HHH_RecD2139229 3.4e-34-
pf:DAP3328375Mitochondrial ribosomal death-associated protein 3 0.03-
pf:AAA_30329507AAA domain 8.7e-43-
pf:AAA_11329389AAA domain 6.8e-05-
pf:PhoH330399PhoH-like protein 0.06-
pf:UvrD-helicase330389UvrD/REP helicase N-terminal domain 1-
pf:DEAD331473DEAD/DEAH box helicase 0.021-
pf:RsgA_GTPase331391 0.099-
pf:nSTAND3332375 0.0029-
pf:AAA_19333462AAA domain 8.4e-45-
pf:AAA_16337475AAA ATPase domain 0.066-
pf:PIF1341440PIF1-like helicase 0.0013-
pf:NPHP3_N341376 0.0021-
pf:P-loop_TraG341392 0.52-
pf:AAA_22343439AAA domain 0.0021-
pf:SLFN-g3_helicase343429 0.024-
pf:MeaB343376 0.32-
pf:TrwB_AAD_bind344382Type IV secretion-system coupling protein DNA-binding domain 0.3-
pf:AAA_28346427AAA domain 0.42-
pf:Viral_helicase1347469Viral (Superfamily 1) RNA helicase 0.0075-
pf:NAT10_TcmA_helicase347442 0.0046-
pf:AAA347375ATPase family associated with various cellular activities (AAA) 0.39-
pf:TraI_hel_assoc_N359453 0.0011-
pf:AAA_11419461AAA domain 0.85-
pf:SH3_13566632 2.1e-17-
pf:Viral_helicase1647698Viral (Superfamily 1) RNA helicase 7.3e-05-
pf:UvrD_C_2651699UvrD-like helicase C-terminal domain 8e-20-
pf:UvrD_C655697UvrD-like helicase C-terminal domain 0.76-

nal:B005_1018 pf:OB_YrrC pf:HHH_5 pf:HHH pf:HHH_RecD2 pf:HHH_RecD2 pf:DAP3 pf:AAA_30 pf:AAA_11 pf:PhoH pf:UvrD-helicase pf:DEAD pf:RsgA_GTPase pf:nSTAND3 pf:AAA_19 pf:AAA_16 pf:PIF1 pf:NPHP3_N pf:P-loop_TraG pf:AAA_22 pf:SLFN-g3_helicase pf:MeaB pf:TrwB_AAD_bind pf:AAA_28 pf:Viral_helicase1 pf:NAT10_TcmA_helicase pf:AAA pf:TraI_hel_assoc_N pf:AAA_11 pf:SH3_13 pf:Viral_helicase1 pf:UvrD_C_2 pf:UvrD_C

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