| Motif id | From | To | Definition | E value | Score |
| pf:RuvA_N | 1 | 61 | RuvA N terminal domain
| 4.1e-19 | - |
| pf:RIP | 35 | 76 | Ribosome inactivating protein
| 0.25 | - |
| pf:HHH_5 | 71 | 129 | Helix-hairpin-helix domain
| 1.7e-16 | - |
| pf:HHH | 75 | 90 | Helix-hairpin-helix motif
| 0.47 | - |
| pf:HHH | 105 | 123 | Helix-hairpin-helix motif
| 0.55 | - |
| pf:HHH_3 | 106 | 136 | Helix-hairpin-helix motif
| 0.59 | - |
| pf:RecR_HhH | 109 | 127 | | 0.0034 | - |
| pf:RuvA_C | 154 | 203 | RuvA, C-terminal domain
| 4.7e-09 | - |