SSDB Motif Search Result


Organism : Nitrosococcus watsonii
Gene : Nwat_2040
Definition : K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] | (GenBank) helicase, RecD/TraA family
Motif idFromToDefinitionE valueScore
pf:OB_YrrC1184 8.2e-23-
pf:HHH_599147Helix-hairpin-helix domain 1.9e-05-
pf:HHH_2100156Helix-hairpin-helix motif 0.00062-
pf:HHH_RecD2101140 0.71-
pf:HHH_RecD2149238 1.8e-33-
pf:HHH_5163211Helix-hairpin-helix domain 0.0087-
pf:AAA_30331510AAA domain 6.2e-42-
pf:AAA_11332372AAA domain 0.0039-
pf:UvrD-helicase332375UvrD/REP helicase N-terminal domain 0.044-
pf:AAA_19334465AAA domain 3.5e-43-
pf:RsgA_GTPase336376 0.011-
pf:ATP-synt_ab339378ATP synthase alpha/beta family, nucleotide-binding domain 0.39-
pf:PIF1341442PIF1-like helicase 0.0054-
pf:AAA_16342375AAA ATPase domain 0.0066-
pf:ABC_tran342377ABC transporter 0.017-
pf:AAA_29342372P-loop containing region of AAA domain 0.22-
pf:AAA_22345455AAA domain 3.3e-05-
pf:nSTAND3345375 0.04-
pf:SLFN-g3_helicase345534 0.047-
pf:AAA_14345433AAA domain 0.42-
pf:TrwB_AAD_bind346373Type IV secretion-system coupling protein DNA-binding domain 0.031-
pf:cobW346374CobW/HypB/UreG, nucleotide-binding domain 0.4-
pf:Viral_helicase1347494Viral (Superfamily 1) RNA helicase 1.2e-05-
pf:NTPase_1348375NTPase 0.012-
pf:NAT10_TcmA_helicase348446 0.013-
pf:AAA_28348364AAA domain 0.43-
pf:AAA_5348444AAA domain (dynein-related subfamily) 0.57-
pf:AAA349400ATPase family associated with various cellular activities (AAA) 0.034-
pf:ATP_bind_1349376Conserved hypothetical ATP binding protein 0.35-
pf:TraI_hel_assoc_N357454 0.011-
pf:SH3_13571631 1.4e-19-
pf:KOW6_SPT5604645 0.16-
pf:Viral_helicase1644698Viral (Superfamily 1) RNA helicase 0.008-
pf:UvrD_C_2650698UvrD-like helicase C-terminal domain 6.2e-19-

nwa:Nwat_2040 pf:OB_YrrC pf:HHH_5 pf:HHH_2 pf:HHH_RecD2 pf:HHH_RecD2 pf:HHH_5 pf:AAA_30 pf:AAA_11 pf:UvrD-helicase pf:AAA_19 pf:RsgA_GTPase pf:ATP-synt_ab pf:PIF1 pf:AAA_16 pf:ABC_tran pf:AAA_29 pf:AAA_22 pf:nSTAND3 pf:SLFN-g3_helicase pf:AAA_14 pf:TrwB_AAD_bind pf:cobW pf:Viral_helicase1 pf:NTPase_1 pf:NAT10_TcmA_helicase pf:AAA_28 pf:AAA_5 pf:AAA pf:ATP_bind_1 pf:TraI_hel_assoc_N pf:SH3_13 pf:KOW6_SPT5 pf:Viral_helicase1 pf:UvrD_C_2

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