| Motif id | From | To | Definition | E value | Score |
| pf:RuvA_N | 1 | 62 | RuvA N terminal domain
| 6.7e-27 | - |
| pf:Trans_reg_C | 2 | 28 | Transcriptional regulatory protein, C terminal
| 0.49 | - |
| pf:HHH_5 | 72 | 130 | Helix-hairpin-helix domain
| 7e-16 | - |
| pf:HHH | 74 | 91 | Helix-hairpin-helix motif
| 0.61 | - |
| pf:HHH | 109 | 125 | Helix-hairpin-helix motif
| 0.0043 | - |
| pf:RecR_HhH | 109 | 128 | | 0.0032 | - |
| pf:Transposase_20 | 109 | 134 | Transposase IS116/IS110/IS902 family
| 0.25 | - |
| pf:IMS_HHH | 112 | 125 | IMS family HHH motif
| 0.21 | - |
| pf:RuvA_C | 158 | 202 | RuvA, C-terminal domain
| 2.1e-16 | - |