| Motif id | From | To | Definition | E value | Score |
| pf:CheB_methylest | 14 | 186 | CheB methylesterase
| 1.3e-54 | - |
| pf:CheR_N | 213 | 274 | CheR methyltransferase, all-alpha domain
| 3.3e-09 | - |
| pf:CheR | 278 | 468 | CheR methyltransferase, SAM binding domain
| 4.8e-49 | - |
| pf:DUF2987 | 595 | 695 | Protein of unknown function (DUF2987)
| 1 | - |
| pf:CEP89 | 630 | 719 | | 0.021 | - |
| pf:Golgin_A5 | 633 | 725 | Golgin subfamily A member 5
| 0.044 | - |
| pf:OmpH | 639 | 716 | Outer membrane protein (OmpH-like)
| 0.46 | - |
| pf:DUF1664 | 641 | 704 | Protein of unknown function (DUF1664)
| 0.24 | - |
| pf:CENP-F_leu_zip | 642 | 727 | Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
| 0.065 | - |
| pf:LEKR1 | 652 | 723 | | 0.067 | - |
| pf:PAS_10 | 721 | 826 | PAS domain
| 8.3e-21 | - |
| pf:PAS_4 | 727 | 830 | PAS fold
| 1 | - |
| pf:PAS_4 | 850 | 958 | PAS fold
| 7.6e-11 | - |
| pf:HisKA | 986 | 1050 | His Kinase A (phospho-acceptor) domain
| 2.7e-18 | - |
| pf:HATPase_c | 1098 | 1215 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
| 2.4e-32 | - |
| pf:PDE8A_N | 1238 | 1338 | | 7.9e-05 | - |
| pf:Response_reg | 1242 | 1354 | Response regulator receiver domain
| 3.4e-27 | - |