| Motif id | From | To | Definition | E value | Score |
| pf:HTH_Tnp_ISL3 | 1 | 23 | Helix-turn-helix domain of transposase family ISL3
| 0.021 | - |
| pf:HTH_31 | 2 | 33 | Helix-turn-helix domain
| 0.12 | - |
| pf:HTH_17 | 2 | 25 | Helix-turn-helix domain
| 0.95 | - |
| pf:LacI | 3 | 48 | Bacterial regulatory proteins, lacI family
| 2.9e-20 | - |
| pf:HTH_3 | 3 | 36 | Helix-turn-helix
| 1.3e-05 | - |
| pf:HTH_28 | 3 | 26 | Helix-turn-helix domain
| 0.5 | - |
| pf:HTH_AraC | 3 | 21 | Bacterial regulatory helix-turn-helix proteins, AraC family
| 0.16 | - |
| pf:HTH_26 | 3 | 35 | Cro/C1-type HTH DNA-binding domain
| 0.36 | - |
| pf:HTH_24 | 3 | 23 | Winged helix-turn-helix DNA-binding
| 0.93 | - |
| pf:HTH_23 | 3 | 24 | Homeodomain-like domain
| 0.82 | - |
| pf:HTH_38 | 4 | 25 | Helix-turn-helix domain
| 0.036 | - |
| pf:Peripla_BP_1 | 60 | 334 | Periplasmic binding proteins and sugar binding domain of LacI family
| 1.3e-17 | - |
| pf:Peripla_BP_3 | 176 | 337 | Periplasmic binding protein-like domain
| 3.4e-17 | - |
| pf:DUF6853 | 179 | 266 | | 0.37 | - |