| Motif id | From | To | Definition | E value | Score |
| pf:PBP1_TM | 1 | 74 | Transmembrane domain of transglycosylase PBP1 at N-terminal
| 2.6e-24 | - |
| pf:DUF4492 | 56 | 76 | Domain of unknown function (DUF4492)
| 0.19 | - |
| pf:UvrB_inter | 106 | 185 | | 0.0093 | - |
| pf:UB2H | 108 | 192 | Bifunctional transglycosylase second domain
| 2.3e-24 | - |
| pf:Transgly | 204 | 374 | Transglycosylase
| 3.5e-56 | - |
| pf:Transpeptidase | 468 | 710 | Penicillin binding protein transpeptidase domain
| 8.2e-26 | - |
| pf:PBP1b_C | 757 | 792 | | 3.3e-17 | - |
| pf:FtsA_C | 803 | 838 | | 0.027 | - |