| Motif id | From | To | Definition | E value | Score |
| pf:PBP1_TM | 1 | 86 | Transmembrane domain of transglycosylase PBP1 at N-terminal
| 1.3e-26 | - |
| pf:UvrB_inter | 118 | 196 | | 1.4e-05 | - |
| pf:UB2H | 120 | 204 | Bifunctional transglycosylase second domain
| 7.2e-28 | - |
| pf:Transgly | 216 | 386 | Transglycosylase
| 7.3e-57 | - |
| pf:Transpeptidase | 480 | 723 | Penicillin binding protein transpeptidase domain
| 2.2e-21 | - |
| pf:PBP1b_C | 767 | 804 | | 7.6e-17 | - |