| Motif id | From | To | Definition | E value | Score |
| pf:Dala_Dala_lig_N | 5 | 87 | D-ala D-ala ligase N-terminus
| 2.6e-20 | - |
| pf:ATPgrasp_ST | 94 | 169 | Sugar-transfer associated ATP-grasp
| 0.46 | - |
| pf:ATPgrasp_Ter | 94 | 274 | ATP-grasp in the biosynthetic pathway with Ter operon
| 0.0003 | - |
| pf:GARS_A | 97 | 267 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
| 3e-08 | - |
| pf:CPSase_L_D2 | 97 | 181 | Carbamoyl-phosphate synthase L chain, ATP binding domain
| 0.052 | - |
| pf:Dala_Dala_lig_C | 105 | 298 | D-ala D-ala ligase C-terminus
| 7.2e-46 | - |
| pf:ATP-grasp_3 | 130 | 268 | ATP-grasp domain
| 4.4e-12 | - |
| pf:ATP-grasp_4 | 136 | 186 | ATP-grasp domain
| 9.9e-05 | - |
| pf:RimK | 136 | 276 | RimK-like ATP-grasp domain
| 0.0046 | - |
| pf:ATPgrasp_ST | 231 | 277 | Sugar-transfer associated ATP-grasp
| 9.1e-05 | - |
| pf:TTL | 233 | 284 | Tubulin-tyrosine ligase family
| 0.014 | - |