SSDB Motif Search Result


Organism : Stigmatella aurantiaca
Gene : STAUR_3879
Definition : K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] | (GenBank) Exodeoxyribonuclease V alpha chain
Motif idFromToDefinitionE valueScore
pf:HHH_5125169Helix-hairpin-helix domain 1.3e-08-
pf:DNA_pol_lambd_f125157Fingers domain of DNA polymerase lambda 0.038-
pf:HHH_2126173Helix-hairpin-helix motif 0.073-
pf:HHH_4127162Helix-hairpin-helix containing domain 0.19-
pf:HHH_4175265Helix-hairpin-helix containing domain 4e-34-
pf:MeaB351410 0.054-
pf:AAA_30365543AAA domain 2.2e-41-
pf:PIF1365530PIF1-like helicase 1e-05-
pf:UvrD-helicase366425UvrD/REP helicase N-terminal domain 1.9e-05-
pf:PhoH366438PhoH-like protein 0.00028-
pf:AAA_11367422AAA domain 1.9e-05-
pf:T2SSE367411Type II/IV secretion system protein 4.8e-06-
pf:RsgA_GTPase367418 0.012-
pf:DEAD367429DEAD/DEAH box helicase 0.02-
pf:AAA_19369500AAA domain 2e-43-
pf:nSTAND3370406 0.003-
pf:RuvB_N374406Holliday junction DNA helicase ruvB N-terminus 0.4-
pf:TsaE375407Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.47-
pf:AAA_16378407AAA ATPase domain 0.0047-
pf:ATPase_2379421ATPase domain predominantly from Archaea 0.24-
pf:AAA_22380488AAA domain 5.7e-05-
pf:SLFN-g3_helicase380464 0.00012-
pf:ABC_tran380413ABC transporter 0.012-
pf:AAA_14380471AAA domain 0.065-
pf:TrwB_AAD_bind380418Type IV secretion-system coupling protein DNA-binding domain 0.16-
pf:AAA_29380403P-loop containing region of AAA domain 0.3-
pf:cobW381409CobW/HypB/UreG, nucleotide-binding domain 0.073-
pf:NACHT381405NACHT domain 0.54-
pf:Viral_helicase1382527Viral (Superfamily 1) RNA helicase 3.6e-05-
pf:NTPase_1382408NTPase 0.01-
pf:AAA_5382470AAA domain (dynein-related subfamily) 0.047-
pf:Helicase_RecD383478Helicase 0.00058-
pf:AAA383465ATPase family associated with various cellular activities (AAA) 0.012-
pf:AAA_28383398AAA domain 0.014-
pf:ATP_bind_1384409Conserved hypothetical ATP binding protein 0.25-
pf:SH3_13605666 5.1e-24-
pf:Viral_helicase1680731Viral (Superfamily 1) RNA helicase 0.009-
pf:UvrD_C_2683731UvrD-like helicase C-terminal domain 2.9e-19-

sur:STAUR_3879 pf:HHH_5 pf:DNA_pol_lambd_f pf:HHH_2 pf:HHH_4 pf:HHH_4 pf:MeaB pf:AAA_30 pf:PIF1 pf:UvrD-helicase pf:PhoH pf:AAA_11 pf:T2SSE pf:RsgA_GTPase pf:DEAD pf:AAA_19 pf:nSTAND3 pf:RuvB_N pf:TsaE pf:AAA_16 pf:ATPase_2 pf:AAA_22 pf:SLFN-g3_helicase pf:ABC_tran pf:AAA_14 pf:TrwB_AAD_bind pf:AAA_29 pf:cobW pf:NACHT pf:Viral_helicase1 pf:NTPase_1 pf:AAA_5 pf:Helicase_RecD pf:AAA pf:AAA_28 pf:ATP_bind_1 pf:SH3_13 pf:Viral_helicase1 pf:UvrD_C_2

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