| Motif id | From | To | Definition | E value | Score |
| pf:MoeA_N | 9 | 162 | MoeA N-terminal region (domain I and II)
| 1.9e-36 | - |
| pf:MoCF_biosynth | 177 | 315 | Probable molybdopterin binding domain
| 1.7e-23 | - |
| pf:MoeA_C | 340 | 407 | MoeA C-terminal region (domain IV)
| 0.014 | - |
| pf:PBP_like | 441 | 619 | PBP superfamily domain
| 3.7e-61 | - |
| pf:SBP_bac_11 | 499 | 594 | Bacterial extracellular solute-binding protein
| 0.013 | - |
| pf:Phosphonate-bd | 501 | 586 | ABC transporter, phosphonate, periplasmic substrate-binding protein
| 0.00068 | - |