SSDB Motif Search Result


Organism : Thermosediminibacter oceani
Gene : Toce_0373
Definition : K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] | (GenBank) helicase, RecD/TraA family
Motif idFromToDefinitionE valueScore
pf:OB_YrrC175 2.3e-25-
pf:SBP_bac_384169Bacterial extracellular solute-binding proteins, family 3 0.12-
pf:HHH_RecD289137 2.1e-05-
pf:HHH_289143Helix-hairpin-helix motif 0.0029-
pf:HHH89102Helix-hairpin-helix motif 0.91-
pf:HHH_590138Helix-hairpin-helix domain 6.3e-09-
pf:HHH_390134Helix-hairpin-helix motif 0.12-
pf:HHH_RecD2140230 1.6e-36-
pf:HHH_5155198Helix-hairpin-helix domain 0.15-
pf:AAA_30321499AAA domain 1.8e-43-
pf:AAA_11321375AAA domain 2.5e-05-
pf:PhoH323388PhoH-like protein 0.29-
pf:UvrD-helicase323381UvrD/REP helicase N-terminal domain 0.0032-
pf:PIF1324461PIF1-like helicase 0.0015-
pf:AAA_19325459AAA domain 2.3e-45-
pf:DEAD325430DEAD/DEAH box helicase 0.038-
pf:nSTAND3326363 0.0001-
pf:T2SSE326368Type II/IV secretion system protein 0.04-
pf:MeaB327369 0.014-
pf:AAA_16328365AAA ATPase domain 0.0031-
pf:NPHP3_N329368 0.0017-
pf:TsaE329361Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.98-
pf:Rad17329356Rad17 cell cycle checkpoint protein 0.72-
pf:Zeta_toxin333362Zeta toxin 0.6-
pf:AAA_23334355AAA domain 0.26-
pf:AAA_29334355P-loop containing region of AAA domain 0.73-
pf:AAA_22335435AAA domain 3.2e-05-
pf:TrwB_AAD_bind335377Type IV secretion-system coupling protein DNA-binding domain 0.029-
pf:ATPase_2335428ATPase domain predominantly from Archaea 0.18-
pf:ABC_tran336361ABC transporter 0.4-
pf:SLFN-g3_helicase337424 0.007-
pf:MobB337367Molybdopterin guanine dinucleotide synthesis protein B 0.12-
pf:cobW337368CobW/HypB/UreG, nucleotide-binding domain 0.12-
pf:SRP54337370SRP54-type protein, GTPase domain 0.43-
pf:Viral_helicase1338457Viral (Superfamily 1) RNA helicase 0.00039-
pf:NTPase_1338366NTPase 0.037-
pf:AAA_5338369AAA domain (dynein-related subfamily) 0.25-
pf:KTI12338368Chromatin associated protein KTI12 0.44-
pf:NAT10_TcmA_helicase339439 0.00059-
pf:AAA_28339435AAA domain 0.0012-
pf:AAA339364ATPase family associated with various cellular activities (AAA) 0.34-
pf:AAA_11417457AAA domain 0.0056-
pf:SH3_13562623 1.7e-23-
pf:DUF4926591631Domain of unknown function (DUF4926) 0.041-
pf:DUF6484609632 0.73-
pf:Viral_helicase1639693Viral (Superfamily 1) RNA helicase 0.00015-
pf:UvrD_C_2646694UvrD-like helicase C-terminal domain 4.3e-20-
pf:UvrD_C650694UvrD-like helicase C-terminal domain 0.079-
pf:AAA_12651697AAA domain 0.55-

toc:Toce_0373 pf:OB_YrrC pf:SBP_bac_3 pf:HHH_RecD2 pf:HHH_2 pf:HHH pf:HHH_5 pf:HHH_3 pf:HHH_RecD2 pf:HHH_5 pf:AAA_30 pf:AAA_11 pf:PhoH pf:UvrD-helicase pf:PIF1 pf:AAA_19 pf:DEAD pf:nSTAND3 pf:T2SSE pf:MeaB pf:AAA_16 pf:NPHP3_N pf:TsaE pf:Rad17 pf:Zeta_toxin pf:AAA_23 pf:AAA_29 pf:AAA_22 pf:TrwB_AAD_bind pf:ATPase_2 pf:ABC_tran pf:SLFN-g3_helicase pf:MobB pf:cobW pf:SRP54 pf:Viral_helicase1 pf:NTPase_1 pf:AAA_5 pf:KTI12 pf:NAT10_TcmA_helicase pf:AAA_28 pf:AAA pf:AAA_11 pf:SH3_13 pf:DUF4926 pf:DUF6484 pf:Viral_helicase1 pf:UvrD_C_2 pf:UvrD_C pf:AAA_12

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