| Motif id | From | To | Definition | E value | Score |
| pf:MobB | 10 | 142 | Molybdopterin guanine dinucleotide synthesis protein B
| 3.8e-47 | - |
| pf:cobW | 11 | 52 | CobW/HypB/UreG, nucleotide-binding domain
| 0.22 | - |
| pf:MoeA_N | 193 | 353 | MoeA N-terminal region (domain I and II)
| 8.9e-41 | - |
| pf:DUF7454 | 282 | 322 | | 0.37 | - |
| pf:MoCF_biosynth | 366 | 502 | Probable molybdopterin binding domain
| 1.4e-30 | - |
| pf:MoeA_C | 517 | 588 | MoeA C-terminal region (domain IV)
| 1.5e-20 | - |