GFIT result for
pcm
|
GFIT result for
pcm
|
| [Motif] [Align] [N-J Tree] [Dendrogram] [Gene Cluster] |
| pcm:AY601_3746 (210 a.a.) |
-- |
RNA polymerase ECF-type sigma factor | |||||||
| DBHit(Length) | Over- lap | Ident. (%) | Score | Para- log | Cont. | KO | Orth | Current Annotation | |
|---|---|---|---|---|---|---|---|---|---|
| > psty:BFS30_00090(218) | 211 | 63.5 | 866 | 51 | -> | hypothetical protein | |||
| > pep:AQ505_18810(259) | 201 | 61.7 | 821 | 41 | <> | hypothetical protein | |||
| > pgs:CPT03_09490(209) | 200 | 60.5 | 797 | 33 | <> | RNA polymerase sigma-70 factor | |||
| > mgot:MgSA37_01961(218) | 210 | 55.2 | 777 | 7 | -> | rpoE_4; ECF RNA polymerase sigma-E factor | |||
| > mgk:FSB76_29400(209) | 202 | 57.4 | 764 | 40 | -> | RNA polymerase sigma-70 factor | |||
| > mgin:FRZ54_16470(205) | 181 | 61.9 | 761 | 11 | -> | RNA polymerase sigma-70 factor | |||
| > mrub:DEO27_007180(214) | 211 | 55.5 | 756 | 35 | -> | RNA polymerase sigma-70 factor | |||
| > msab:SNE25_17075(?) | 206 | 56.8 | 756 | 0 | -- | - | |||
| > mgos:DIU38_007010(214) | 210 | 55.7 | 750 | 29 | -> | RNA polymerase sigma-70 factor | |||
| > muc:MuYL_3502(214) | 209 | 54.1 | 746 | 12 | -> | RNA polymerase sigma-70 factor, ECF subfamily | |||
| > mup:A0256_20260(200) | 189 | 57.7 | 733 | 12 | -> | hypothetical protein | |||
| > prk:H9N25_14285(213) | 209 | 53.6 | 723 | 18 | -> | RNA polymerase sigma-70 factor | |||
| > proe:H9L23_15800(213) | 210 | 51.0 | 708 | 17 | -> | RNA polymerase sigma-70 factor | |||
| > sbx:CA265_14710(221) | 209 | 51.2 | 700 | 26 | -> | hypothetical protein | |||
| > arb:A9P82_07100(193) | 177 | 53.1 | 652 | 20 | -> | hypothetical protein | |||
| > mjj:PQO05_17080(178) | 171 | 58.5 | 638 | 16 | <> | sigma-70 family RNA polymerase sigma factor | |||
| > chih:GWR21_15300(213) | 205 | 44.9 | 620 | 31 | -> | RNA polymerase sigma-70 factor | |||
| > cpi:Cpin_7184(212) | 208 | 46.2 | 618 | 39 | -> | transcriptional regulator, LuxR family | |||
| > fln:FLA_4843(210) | 204 | 45.1 | 590 | 57 | -> | RNA polymerase ECF-type sigma factor | |||
| > csac:SIO70_32645(?) | 202 | 45.5 | 565 | 0 | -- | - | |||
| > chit:FW415_14625(211) | 203 | 44.3 | 558 | 83 | -> | RNA polymerase sigma-70 factor | |||
| > clit:OQ292_22975(211) | 205 | 44.4 | 558 | 0 | -- | K03088 | rpoE | RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > shg:Sph21_1877(240) | 188 | 45.2 | 552 | 28 | -- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > oli:FKG96_06335(211) | 188 | 45.2 | 551 | 34 | -- | RNA polymerase sigma-70 factor | |||
| > coy:HF329_05230(201) | 197 | 45.2 | 550 | 91 | -- | RNA polymerase sigma-70 factor | |||
| > cfil:MYF79_31800(179) | 176 | 46.6 | 540 | 30 | -> | sigma-70 family RNA polymerase sigma factor | |||
| > chor:MKQ68_20665(213) | 200 | 41.0 | 534 | 0 | -> | K03088 | rpoE | RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > hym:N008_02345(211) | 188 | 38.3 | 493 | 3 | -> | hypothetical protein | |||
| > pseg:D3H65_12725(207) | 191 | 40.3 | 489 | 51 | -- | RNA polymerase sigma-70 factor | |||
| > phe:Phep_3098(199) | 189 | 42.9 | 445 | 43 | -> | RNA polymerase sigma-70 factor | |||
| > hsb:MWH26_18365(?) | 174 | 39.7 | 437 | 0 | -- | - | |||
| > pgo:FSB84_07650(191) | 170 | 40.0 | 433 | 149 | -- | RNA polymerase sigma-70 factor | |||
| > emai:KZP23_09865(205) | 176 | 36.4 | 429 | 22 | -- | RNA polymerase sigma-70 factor | |||
| > pdi:BDI_3847(205) | 179 | 39.1 | 425 | 21 | -- | RNA polymerase ECF-type sigma factor | |||
| > hsw:Hsw_4298(224) | 188 | 33.0 | 422 | 5 | -> | hypothetical protein | |||
| > parc:CI960_02670(201) | 179 | 38.5 | 420 | 25 | -- | RNA polymerase sigma-70 factor | |||
| > iro:RT717_06545(?) | 172 | 37.8 | 416 | 0 | -- | - | |||
| > fls:GLV81_00760(194) | 180 | 40.0 | 414 | 5 | -> | RNA polymerase sigma-70 factor | |||
| > prho:PZB74_16955(?) | 168 | 35.7 | 412 | 0 | -- | - | |||
| > chf:KTO58_02775(192) | 171 | 36.3 | 405 | 39 | -- | RNA polymerase sigma-70 factor | |||
| > lacs:H4075_08340(191) | 184 | 39.1 | 401 | 4 | -> | RNA polymerase sigma-70 factor | |||
| > nko:Niako_4406(194) | 174 | 35.6 | 401 | 58 | -- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > fmm:LVD15_16370(?) | 191 | 33.5 | 399 | 0 | -- | - | |||
| > nia:A8C56_17685(200) | 204 | 36.8 | 396 | 25 | -- | hypothetical protein | |||
| > pfai:NXY11_20535(233) | 182 | 37.9 | 396 | 70 | -- | RNA polymerase sigma-70 factor | |||
| > psac:PSM36_3480(200) | 189 | 34.9 | 396 | 17 | -- | RNA polymerase sigma-70 factor | |||
| > ark:D6B99_10770(195) | 173 | 38.2 | 393 | 14 | -- | RNA polymerase sigma-70 factor | |||
| > cbae:COR50_00780(190) | 175 | 33.7 | 393 | 35 | -- | RNA polymerase sigma-70 factor | |||
| > pet:PEIBARAKI_5648(175) | 177 | 33.3 | 393 | 10 | -> | RNA polymerase sigma-70 factor | |||
| > theo:IMW88_03645(?) | 175 | 38.9 | 393 | 0 | -- | - | |||
| > chk:D4L85_29150(208) | 175 | 34.9 | 392 | 31 | -- | RNA polymerase sigma-70 factor | |||
| > bsal:K6V25_03590(202) | 169 | 34.9 | 387 | 16 | -- | RNA polymerase sigma-70 factor | |||
| > rcg:N7E81_18250(?) | 162 | 38.3 | 383 | 0 | -- | - | |||
| > camu:CA2015_2177(205) | 203 | 34.0 | 381 | 15 | -> | RNA polymerase ECF-type sigma factor | |||
| > pgj:QG516_18815(188) | 175 | 35.4 | 380 | 47 | -> | RNA polymerase sigma-70 factor | |||
| > muh:HYN43_016110(177) | 164 | 36.6 | 377 | 28 | -- | RNA polymerase sigma-70 factor | |||
| > mcos:GM418_01610(197) | 176 | 36.4 | 376 | 74 | -- | RNA polymerase sigma-70 factor | |||
| > pgol:K6V26_21590(171) | 168 | 39.3 | 376 | 55 | -- | RNA polymerase sigma-70 factor | |||
| > dfe:Dfer_2436(180) | 168 | 33.9 | 375 | 58 | -- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > pmer:INE87_02493(186) | 171 | 36.3 | 373 | 28 | -- | putative RNA polymerase sigma factor FecI | |||
| > rek:N6H18_13525(195) | 165 | 37.0 | 373 | 10 | -- | RNA polymerase sigma-70 factor | |||
| > anf:AQPE_0211(?) | 186 | 37.1 | 372 | 0 | -- | - | |||
| > est:DN752_23035(203) | 188 | 35.6 | 372 | 30 | -> | hypothetical protein | |||
| > flv:KJS94_15310(196) | 167 | 34.1 | 370 | 5 | -> | RNA polymerase sigma-70 factor | |||
| > nyn:U0035_19735(?) | 165 | 39.4 | 370 | 0 | -- | - | |||
| > pjo:LK449_17230(172) | 163 | 37.4 | 370 | 31 | -- | RNA polymerase sigma-70 factor | |||
| > dfq:NFI81_17845(203) | 179 | 36.9 | 366 | 23 | -- | K03088 | rpoE | RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > tpel:P0M28_11690(?) | 173 | 31.2 | 366 | 0 | -- | - | |||
| > dcn:MUK70_21960(203) | 179 | 36.9 | 365 | 42 | -- | K03088 | rpoE | RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > dyc:NFI80_16850(203) | 179 | 36.3 | 365 | 28 | -- | RNA polymerase sigma-70 factor | |||
| > pbuc:LK429_06325(188) | 165 | 33.3 | 365 | 8 | -- | RNA polymerase sigma-70 factor | |||
| > pex:IZT61_06420(208) | 190 | 35.8 | 364 | 19 | -> | RNA polymerase sigma-70 factor | |||
| > dpf:ON006_16380(?) | 164 | 34.8 | 362 | 0 | -- | - | |||
| > rmg:Rhom172_1020(187) | 170 | 35.3 | 361 | 13 | -> | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > rmr:Rmar_1075(187) | 170 | 35.3 | 361 | 14 | -> | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > dori:FH5T_17275(199) | 174 | 32.2 | 360 | 15 | -- | RNA polymerase sigma70 factor | |||
| > cmr:Cycma_4338(207) | 184 | 34.8 | 359 | 13 | -> | K03088 | rpoE | RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > fgg:FSB75_20250(188) | 182 | 32.4 | 354 | 0 | -> | RNA polymerase sigma-70 factor | |||
| > agi:FSB73_07480(182) | 171 | 33.3 | 353 | 25 | -> | RNA polymerase sigma-70 factor | |||
| > arac:E0W69_005330(183) | 168 | 35.1 | 353 | 12 | -> | RNA polymerase sigma-70 factor | |||
| > atee:K9M52_07940(188) | 171 | 33.3 | 353 | 16 | -> | RNA polymerase sigma-70 factor | |||
| > dsn:HWI92_17340(203) | 176 | 34.7 | 353 | 28 | -- | RNA polymerase sigma-70 factor | |||
| > drc:G0Q07_09120(197) | 171 | 35.1 | 352 | 14 | -- | RNA polymerase sigma-70 factor | |||
| > bdh:GV66_00125(188) | 176 | 30.7 | 351 | 20 | -- | RNA polymerase sigma70 factor | |||
| > bdo:EL88_15955(188) | 176 | 30.7 | 351 | 21 | -- | RNA polymerase sigma70 factor | |||
| > bvu:BVU_0023(208) | 176 | 30.7 | 351 | 19 | -- | RNA polymerase ECF-type sigma factor | |||
| > bfc:BacF7301_03990(189) | 172 | 33.7 | 350 | 42 | -- | RNA polymerase sigma-70 factor | |||
| > bis:DXK01_000425(180) | 165 | 35.8 | 346 | 13 | -- | RNA polymerase sigma-70 factor | |||
| > dyh:G7051_05565(?) | 170 | 32.9 | 346 | 0 | -- | - | |||
| > dys:G7050_05305(183) | 170 | 32.9 | 346 | 5 | -- | K03088 | rpoE | RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > bcac:CGC64_01580(185) | 178 | 30.3 | 343 | 17 | -- | RNA polymerase sigma-70 factor | |||
| > echi:FKX85_15485(192) | 172 | 36.6 | 343 | 23 | -- | RNA polymerase sigma-70 factor | |||
| > mrob:HH214_19600(189) | 176 | 30.7 | 343 | 2 | -> | sigma-70 family RNA polymerase sigma factor | |||
| > gba:J421_2384(185) | 166 | 36.7 | 339 | 37 | -- | RNA polymerase sigma-70 factor | |||
| > fua:LVD17_25255(?) | 166 | 34.3 | 337 | 0 | -- | - | |||
| > sfol:H3H32_25945(?) | 179 | 31.8 | 337 | 0 | -- | - | |||
| > zsp:MQE36_10575(193) | 172 | 32.6 | 336 | 24 | -> | RNA polymerase sigma-70 factor | |||
| > als:DJ013_21085(201) | 162 | 34.0 | 335 | 10 | -- | K03088 | rpoE | RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > nso:NIASO_20440(195) | 186 | 35.5 | 335 | 14 | -- | RNA polymerase subunit sigma-24 | |||
| > pgin:FRZ67_11590(196) | 157 | 33.1 | 335 | 2 | -> | RNA polymerase sigma-70 factor | |||