Arvicanthis niloticus (African grass rat): 117697134
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Entry
117697134 CDS
T08817
Symbol
Cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117697134 (Cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117697134 (Cpsf2)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117697134 (Cpsf2)
U7-dependent histone pre-mRNA processing factors
117697134 (Cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
117697134
NCBI-ProteinID:
XP_034343940
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKNKLESGLTNGEEPMDQDLSDVPTKCVSATESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
DMQVDAPSDSSVIAQQKAMKSLFGDDEKELGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatcatcaaattaactaccctctctggggtccaagaagagtctgctctttgc
tatcttctccaggttgatgagtttagatttttgttggactgtggctgggacgagcacttc
tctgtggacattattgattccctgaggaagcatgttcaccagatcgatgcagtgctcctg
tctcaccctgacccactccacctcggtgccctcccattcgccgtggggaagctggggctg
aactgtgccatctatgcaacaattcctgtgtataaaatgggccagatgttcatgtacgac
ctttatcagtctcgacataatacagaagattttactctctttacattggatgatgtggat
gcagcctttgataaaatacagcagctaaaattctctcagattgtgaacctgaaaggcaaa
ggacatggcttgtccatcacacccctgccagctggtcatatgataggaggaacaatatgg
aaaatagtcaaagatggagaagaagaaattgtttatgccgttgacttcaaccacaagagg
gagatccacttaaatggatgttccctggaaatgctaagcagaccctctctacttatcaca
gattcatttaatgctacttatgtgcagcctagaagaaaacagagggatgaacagctcctg
acaaatgtcctggaaactcttcggggtgatgggaatgtgctaatagccgtggacacagcg
ggcagagttctggagcttgctcaacttcttgatcagatttggagaactaaagatgcgggg
ttgggcgtttactcactggctctcctgaataacgtcagttacaacgtggtggagttttcc
aaatcacaggtagagtggatgagtgataaattgatgagatgttttgaagacaaaagaaat
aatccatttcagtttcgccatctctctctgtgccacggtctttctgacttggctcgagtt
ccaagccccaaagttgtacttgccagccagcctgacctggagtgtggattctcaagggac
ctctttattcagtggtgtcaggaccctaagaactcaatcattctaacttataggacaact
cctgggacgttagcacgtttcttaattgataatccttctgagaaagttacagaaatagag
ctgaggaaacgtgtgaagcttgaagggaaagaacttgaggaatatgtggaaaaagaaaaa
ctaaagaaagaagctgctaagaaactggagcagtcgaaagaggcagacatcgattccagt
gacgagagtgacgtggaagaagatgtcgaccagccgtcggctcacaagacaaagcacgac
ctgatgatgaagggggaaggcagccgaaaagggagcttcttcaaacaggccaaaaagtcc
taccccatgtttcctgccccagaagaaagaattaaatgggacgagtatggagagatcatc
aaaccagaagatttcttagtgccagaacttcaggctactgaagaagaaaaaaacaaatta
gaatccggtttgacaaatggagaggagcccatggaccaggacctatctgatgttcccacc
aagtgtgtttctgcaacagagtctattgagataaaagccagagttacttacatagactat
gagggacgctccgatggagactccattaaaaagatcatcaatcagatgaaaccgagacag
ctgatcattgtccatggcccaccagaggccagtcaggatctagccgagtgctgccgtgcg
tttggtgggaaagatattaaagtgtacatgccaaagctgcacgagacagtcgatgccacc
agtgagacacatatctaccaggtaagattaaaggactcacttgtcagctcccttcagttc
tgtaaagctaaagatgccgagttagcttggatagatggtgtcttagacatgagagtttcc
aaagtggacacaggagttattttagaagagggagaactcaaggacgatggagaagactcg
gacatgcaagtggatgctccttcagattctagtgtgatagcccagcagaaggccatgaag
agtctgtttggagatgatgagaaagagttgggtgaggagagtgagatcatccccacactg
gagcctttgccacctcacgaggttcctggacatcagtcagtttttatgaatgaaccgaga
ctgtctgacttcaagcaagttcttttgcgggaggggattcaagcggaatttgtagggggc
gtacttgtctgcaacaatcaagtagcggttcgcagaacagaaactggacgcatcgggtta
gaaggctgcctttgtcaagacttttataggatacgagaccttttatatgaacagtatgcc
attgtgtaa
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