Lotus japonicus: Lj5g3v1097080.1
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Entry
Lj5g3v1097080.1 CDS
T04348
Symbol
Lj5g3v1097080.1
Name
(Kazusa) -
KO
K10841
DNA excision repair protein ERCC-6
Organism
lja
Lotus japonicus
Pathway
lja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Lj5g3v1097080.1 (Lj5g3v1097080.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lja03036
]
Lj5g3v1097080.1 (Lj5g3v1097080.1)
03400 DNA repair and recombination proteins [BR:
lja03400
]
Lj5g3v1097080.1 (Lj5g3v1097080.1)
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
Lj5g3v1097080.1 (Lj5g3v1097080.1)
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
Lj5g3v1097080.1 (Lj5g3v1097080.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
TFIIF_beta
Motif
LinkDB
All DBs
AA seq
1040 aa
AA seq
DB search
MVRKGILTPFHKLKGFERRFSQPEASASHNAETSASHAAAQQENNGDLVSSSVERAARSF
SEAAKARPTTKLLESRDLPKLDAPTIPFRRLTKPLKYSKPIDREAEPNKDSKRKRKRPLP
GRQWTNRVSREDMQLEDSENANGCLDTSDQENLGAQDDLADHESSYVTLEGGLKIPDNIF
EALFDYQKVGVQWLWELHCQKAGGIIGDEMGLGKTVQVLSFLGALHFSGMFQPSIIVCPV
TLLRQWKREANKWYPKFHVELLHDSAQDSAPKKKQDKSDESDYENSSSDDNDNERSMSSG
NSRKWESLINRVTRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEVTLV
CKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIGVGGYANATP
LQVSTAYRWVNILFILVREKVRPHIKEFDIVLPCYRCAVVLRDLIMPYLLRRMKADVNAQ
LPNKTEHVLFCSLTPEQVSSYRAFLASTEVEEILDGNRNSLSGIDVMRKICNHPDLLERD
HALSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFCQTQQMLDIFENFLTTSGHVYRR
MDGHTPVKYRMALIDEFNASNEIFVFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQA
RERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDL
FILNVDGDTGSTETSNIFSQISEEVNVIGSHIDNQDKHQYNQTAEAGSGDDDVDNDGESP
RGSLRGKGKEKVEGGSGIDEETNILKSLFDANGIHSAMNHDVIMNAHDGEKMRLDEQASQ
VAQRAAEALRQSRILRSNDSVSVPTWTGRSGAAGAPSSVRRKFGSTVNPQLVNNSKAPDA
LPSNGTNKFNGFAAGASSGKALSSAELLSKIRGNQEKAIGAGLEHQLGTSSTTNQARSTD
VRSSRAAENSSGSQPEVLIRQICTFLQQQGGSSSSASIVQHFKDRVSSRELALFKNMLKE
IAILQKGSNGSHWVLKPEYQ
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggtcagaaaaggaattttaactccttttcataagctgaagggatttgagcggcgcttt
agtcaacctgaagcatcagctagtcataatgctgaaacatccgctagccatgctgcagca
cagcaagaaaacaatggtgatcttgtctcttccagtgttgaaagagctgctagatcattt
tctgaggcagcgaaagctcgccccaccaccaagctgcttgagtctagagatttaccgaag
cttgatgcacccactattccctttcgcaggctcacaaaacctcttaaatattccaaacct
atagatagagaggccgagccaaataaagattcaaaaaggaaaaggaagcgacctttgcct
ggtaggcaatggaccaatcgtgtttctcgtgaggatatgcagctggaagatagtgaaaat
gcaaatggttgtttggatacttccgatcaggaaaatttaggagcacaagatgaccttgct
gatcatgaatcttcttatgtcacattagaaggtgggctgaaaatccctgataacatattt
gaagctctgtttgattatcaaaaggttggtgttcaatggctgtgggaattacattgtcaa
aaagctggtggaattattggtgatgagatgggtcttggtaaaactgtccaggtgttgtca
tttctgggtgcattgcatttcagtggtatgttccagcccagcattattgtctgtcctgtt
accctcttgcgacagtggaaaagggaagctaataagtggtacccgaaattccatgtagag
cttttacatgattctgctcaggattctgcccctaaaaagaagcaagacaaatccgatgaa
tcagactatgaaaacagtagttcagatgacaatgataatgagagaagtatgtcatctgga
aactcaagaaaatgggaatccctgataaatcgtgtcacaagatctgaatcgggattactt
atcaccacttatgagcagctcagaatattgggggaccaattgcttgacattgaatggggc
tacgcagttcttgatgaagggcataaaataaggaatccgaatgctgaagtcaccctcgta
tgcaaacagcttcaaactgtacaccgcatcataatgactggtgcacctattcagaacaaa
ctgactgaactctggtcattgtttgattttgtttttcctggaaaattgggtgttttacct
gtatttgaagctgaatttgcagttccaataggagttggtggatatgcaaatgccacaccc
ttacaagtatcaacagcatacaggtgggtcaatattctttttattttggttagggagaag
gtcagaccccatatcaaagaatttgatatagttttgccgtgttacaggtgtgccgtggtg
cttcgtgatttaatcatgccatatcttctccgacgcatgaaggctgatgtaaatgctcaa
cttcctaataaaactgagcatgttttattttgcagtcttacaccagagcaagtatcttct
tacagggcatttttagcaagcactgaagtggaggaaatattggatggaaaccggaattct
ctgtctgggattgatgtaatgcgcaagatctgcaaccatcctgacctacttgaaagggac
catgccttaagtaatccagattatggaaatccagaacgtagtgggaaaatgaaagttgta
gctcaggtgcttaatgtttggaaggaacaaggtcaccgtgttcttcttttctgtcaaacc
caacaaatgcttgacatttttgagaattttttgactacttctggtcatgtttaccggaga
atggatggtcacactcccgtcaaatatagaatggctttaatagatgaatttaatgcctca
aacgagatatttgttttcattttgacaaccaaagttgggggtttagggacaaatcttaca
ggtgcaaatagggtgatcatcttcgaccctgattggaatccttcaactgatatgcaagct
agagagcgtgcttggcgcattggtcagaaacgggatgtgacagtgtataggttgatcaca
cgtggaacgatagaggagaaagtgtatcaccggcagatttacaaacattttcttaccaat
aagatattgaagaacccacagcagaaaaggttctttaaagcccgggatatgaaagacctt
ttcatactgaatgtggatggagatactgggtctactgaaacatcgaacattttcagtcaa
atatctgaagaagtaaatgtcattggttcacacatagataatcaggataagcatcaatat
aaccaaactgctgaagcgggttctggagatgatgacgttgataatgatggtgaatcaccg
agaggatctttaagaggaaaagggaaagagaaggttgaaggcggcagtggaattgatgag
gaaacaaatatattgaaaagtctttttgacgccaatggcatacatagtgccatgaaccat
gatgtgatcatgaatgctcatgatggggagaagatgagacttgatgagcaagcttcccag
gttgcgcaacgagctgcagaagctttacgtcagtcacggatactccgaagcaatgacagc
gtctccgttccaacatggacaggaaggtcgggagctgctggtgcaccatcatcagttcgg
cggaagtttggttcaaccgtgaatccccagttagtaaataattcaaaggcaccggatgca
ttaccaagcaacggtaccaacaaattcaatggatttgctgctggggcatcttctggtaaa
gcattatcttctgctgaactgttgtctaaaattcgaggtaaccaagaaaaagcaatcggt
gctgggcttgaacatcagcttggtacgtccagtaccactaatcaagcaagatctacagat
gttagatcttctagggctgctgaaaattcatctggatcgcaacctgaagtattgattcgt
caaatatgtacttttctacaacagcaaggtggtagttccagttcagccagcatagtacag
catttcaaggaccgtgtttcctcaagagaacttgccctattcaagaatatgttaaaggaa
atagcaattttgcagaaaggatcaaatggttcccattgggttctgaagccagagtatcaa
taa
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