Lotus japonicus: Lj6g3v0082160.1
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Entry
Lj6g3v0082160.1 CDS
T04348
Symbol
Lj6g3v0082160.1
Name
(Kazusa) -
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
lja04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Lj6g3v0082160.1 (Lj6g3v0082160.1)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
Lj6g3v0082160.1 (Lj6g3v0082160.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
Lj6g3v0082160.1 (Lj6g3v0082160.1)
04121 Ubiquitin system [BR:
lja04121
]
Lj6g3v0082160.1 (Lj6g3v0082160.1)
03400 DNA repair and recombination proteins [BR:
lja03400
]
Lj6g3v0082160.1 (Lj6g3v0082160.1)
Enzymes [BR:
lja01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
Lj6g3v0082160.1 (Lj6g3v0082160.1)
Spliceosome [BR:
lja03041
]
Complex B
Other components
Prp19 complex
Lj6g3v0082160.1 (Lj6g3v0082160.1)
Complex C
Prp19-CDC5 complex
Lj6g3v0082160.1 (Lj6g3v0082160.1)
Ubiquitin system [BR:
lja04121
]
Ubiquitin ligases (E3)
U-box type E3
Lj6g3v0082160.1 (Lj6g3v0082160.1)
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
Lj6g3v0082160.1 (Lj6g3v0082160.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Prp19
ANAPC4_WD40
NBCH_WD40
PROPPIN
U-box
WD40_like
PAS_11
zf-Nse
eIF2A
V_ATPase_I_N
Motif
LinkDB
All DBs
AA seq
524 aa
AA seq
DB search
MNCSISGEIPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTLDDIVPIKTGKIVK
PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQFPISTPNAITAPVLSNGKRAAEDEELAPSAKRIHPGISKIIIDEL
TDCNAALSQQRKKRQIPATLAPVDALETYTQISSHPFHKTNKQGIICLDILYSKDLIATG
GVDTNAVIFDRPSGQILATLSGHSKKVTSVKFVAQGDSLLTSSADKTVRLWQGSDDGNYN
CRHILRDHTAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDPSGSSAGYTAA
AFHPDGLILGTGTTDSIVKIWDVKSQANVAKFDGHVGHVNAISFSENGYYLATAAHDGVK
LWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYIAIAGSDVRIHQVANVKSEWNIIKTFP
DLSGTGKATCVKFGPDSKYVAVGSMDRNLRIFGLPGEDDVPAES
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaattgctccatctccggtgagattccggaagagcccgtcgtgtccaggaactctggt
cttctcttcgagaagcgtttgatcgagagacacatatcggattatgggaaatgtccaatt
actggagaaccacttactctggatgacattgtaccaatcaaaactggcaagatagtgaag
cccagacctgtgcaagcagctagcatccctggcatgcttggaatgtttcaaaatgaatgg
gatgggttgatgctatcaaattttgcattggagcaacaattgcacaccgcaaggcaagag
ctaagtcatgctctatatcagcatgatgctgcttgccgcgtgattgcaagacttaaaaag
gaaagagatgaagctaggtctctacttgcacaggcagaaaggcagttccctatttctaca
ccaaatgccataacagcccctgtcctaagcaatgggaaaagagctgctgaggatgaggag
ctggcacctagtgcgaagagaatacatcctggaatatctaaaatcataattgatgagcta
acagactgcaacgctgctctttcacagcagaggaaaaagcgccagattcctgcaactttg
gctcctgttgacgctctggagacatacacccaaatatctagtcatccctttcacaaaact
aacaaacaaggcattatatgtcttgatatcctttattctaaggacctaattgcaactgga
ggtgttgatacaaatgctgttatttttgaccgaccatcaggacaaatactagctacactc
agcggtcactccaaaaaggtaaccagtgtgaagtttgtagctcagggcgattcactctta
actagttcagcagataagacagtacgtttgtggcaagggtcagatgatggtaactataac
tgcaggcatatattgagggatcatacagctgaggtgcaagctgtcaccgtccatgccacc
aataattactttgtgactgcttcgcttgatggcacttggtgcttttatgaactgtcgtca
gggacatgtctcactcaggtttcggacccttctggttcttctgcaggctatacagctgca
gcttttcatcctgatggtctcattcttggaactggcacaactgattctattgttaagatc
tgggatgtgaaaagtcaggcaaatgttgctaagtttgatggacatgtagggcatgtgaat
gccatatctttttccgagaatggatactaccttgcgactgcagctcatgatggtgtgaag
ctttgggatctacgtaaattgaagaacttccgtaatttcgctccatatgactcagaaact
ccgacgaactccgtggagttcgaccacagtggatcctacattgcaattgcaggctctgat
gtaagaattcaccaagttgcaaatgtgaaatctgaatggaacattatcaaaacttttcct
gatttatctggaacagggaaggcaacgtgtgtcaaatttggtcctgattcaaaatatgtg
gcggttggatcaatggaccgaaatcttagaatatttggcttgcctggtgaagatgatgtt
cctgctgagtcataatgt
DBGET
integrated database retrieval system
