KEGG   Nicotiana tabacum (common tobacco): 107769305
Entry
107769305         CDS       T04643                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03018  RNA degradation
nta03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107769305
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107769305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nta03019]
    107769305
   03041 Spliceosome [BR:nta03041]
    107769305
Messenger RNA biogenesis [BR:nta03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107769305
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107769305
Spliceosome [BR:nta03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107769305
 Complex C
  U2 snRNP components
    107769305
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 107769305
NCBI-ProteinID: XP_016443997
UniProt: A0A1S3XWB6
LinkDB
Position
Un
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLETTKVVDQDKFPHMLSVRNC
FIRGSVVRYVQLPPEGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttttcatacttcaaggacctggtgggcagagaagtgacagtggaactgaag
aatgatttggctatccgaggcacgctccattcagttgatcagtatctcaacattaagctc
gaaaccacaaaggtcgttgatcaagacaagttccctcacatgctttcagtgaggaactgc
ttcatcagaggatcggttgtgagatacgtccagttacctcccgagggagttgacattgag
ctgcttcatgatgctacgaggagagaagctcggggtggctaa

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